Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq26110 536 3e-148 >seq26110 Length=72620 Score = 536 bits (594), Expect = 3e-148 Identities = 915/1315 (70%), Gaps = 50/1315 (4%) Strand=Plus/Minus Query 10369 ATGGATCCTAAAAAGTACTATATGCTCACCAGGaaaaaagaaagaaaacccaagccaaag 10428 |||||| ||| | | |||| | ||| || ||||||||||| ||| ||||||| || Sbjct 52053 ATGGATTCTACAGAATACTTTTGGCTTACTCGGAAAAAAGAACCTAAAACCAAGCCTAAA 51994 Query 10429 agcacaccattaccaaaagccaagcaaaaCTATTTAGAGGCCGAAGCAACTCTAAAAGAA 10488 || ||| |||| ||||| | ||||| || |||||||| || | | | | ||| Sbjct 51993 TCCAGACCGCTACCTAAAGCTACTCAAAAGTACTTAGAGGCAGAGGAAGAATTTACTGAA 51934 Query 10489 GAATTAATCGAGTTGGCCATTGGTTTTGAAAGTAAGTTTCAGCCGATCCATACCAAACAC 10548 | ||| | | ||| ||| | |||| || || ||| | || || || Sbjct 51933 GCTTTAGACAATCTGGAAATTAAATACGAAAAGAAATTCCAGTTTAAATCAACAAAGCAT 51874 Query 10549 TGGCGCTTTGATTTTCATATAGTGAAATTGCGTTTGCTCATTGAAATTGAGGGTGGTCCC 10608 ||||| |||||||||||| || | || ||| | | ||||||||| ||||||||| Sbjct 51873 TGGCGTTTTGATTTTCATTTAATTGAACATCGTATTTTAGTTGAAATTGCGGGTGGTCCA 51814 Query 10609 TGGTCTGGTGGGCGTGGTGGAAAGCTGTCAAATAAAGCATGGAGTCTTAATCGATATGAT 10668 |||||||| || ||| || || || ||||||||| || |||||| |||| || ||| Sbjct 51813 TGGTCTGGCGGTCGTAAGGGCAAACTTAAAAATAAAGCTTGTAGTCTTGATCGTTACGAT 51754 Query 10669 CATGCTGAAGAGATGGGTTACAAAATAGAGCGCTTTCATCCAGATTCTATTTT------- 10721 |||||||||||||| |||| ||| ||| | | ||| ||| | | Sbjct 51753 GTGGCTGAAGAGATGGGCTACACCGTAGTTCGCATAGAGACAGCTTCAAGATGCCGCATT 51694 Query 10722 -----GTCGGGATATGT-CA-TCA---ACTGGATAAAA-AGTGAATTAGCGAGAA---TT 10767 ||| ||| | | || | | |||| ||| ||||||| || | || || Sbjct 51693 GATGAGTCTGGACCTTTGCAGTTACGGACTGAATACGCTAGTGAATG-GCTAAAAAATTT 51635 Query 10768 GAAGA-------------TGGAGCAGATCAGACCATTTCCTCCAACTGATTTTATGGATC 10814 |||| |||| ||||||| |||||||||||||||||||||||| || | Sbjct 51634 AAAGAGGCAAATATTTAATGGATCAGATCACACCATTTCCTCCAACTGATTTTATTGACC 51575 Query 10815 AGGCAGAAGAAGAGGAAGCAATTCGTTTAATACCCGCTCCAGACCTAAAGAAATGGGTTG 10874 | ||||| ||||||||||| ||||| || |||| || | || |||| || ||||| | Sbjct 51574 AAGCAGATGAAGAGGAAGCGATTCGCATAGTACCTGCGTCTGATTTAAAAAATTGGGTAG 51515 Query 10875 TGGCCAACTACTTAACGATAGGTGGACCTCTTTATAACCCTGACCATGACCATATTGCTG 10934 | || || | | || | ||||||||| | |||| || || ||||||||||| |||| Sbjct 51514 TTGCTAATTTTCTTACACTTGGTGGACCTTTACATAATCCAGATCATGACCATATCGCTG 51455 Query 10935 AGCTGCTTCACGATAATGAAGAATTTTTAGCATTTGCTTGGGCCTCTTCTGCATATAAAA 10994 || ||||||| || ||||| | ||||| || | ||| ||||| ||| |||| |||| | Sbjct 51454 AGATGCTTCATGACAATGAGGGGTTTTTGGCTTCTGCATGGGCTTCTACTGCTTATACGA 51395 Query 10995 GTAAGCAAGCT-ATGGTGTTAGGTCAGTGCGAAAAAGTCATGTTCAATGTTGGTGGATGG 11053 | || |||| |||||| | || || || ||||| || ||||| | || || ||| Sbjct 51394 G-AACTAAGCGCATGGTGCTCGGCCAATGTGAAAAGGTTATGTTTCAACAAGGCGGCTGG 51336 Query 11054 CGTAAGGCCAGACAAGAGCAACAGATGCGTGATTGGTTTGGTTTTGTACCTACTTATTTA 11113 || ||| | |||||||| || |||||||||||||| |||||||| || | ||| ||| Sbjct 51335 AAGAAAGCCCGTCAAGAGCAGCAAATGCGTGATTGGTTCGGTTTTGTTCCAATTTACTTA 51276 Query 11114 ATAACTGTCGACGCTTCTTTCTGTGAGCGTGCAAACGATACAGAGTTCTGTTACTTACTT 11173 || ||| |||| || || ||||| |||||||||| ||||| ||| || || Sbjct 51275 ATCACTATCGATGCAAGCTTTTGTGAAAAGGCAAACGATAACGAGTTTTGTGCTTTGTTT 51216 Query 11174 GAACATGAGCTTTACCACATTGGAGTGATGAGAGACGAGGACGGAGAAATTGTTTATAGC 11233 ||||||||||| || |||||||| || | |||| |||||| || ||| |||| ||| Sbjct 51215 GAACATGAGCTCTATCACATTGGTGTAGAGCGAGATTCGGACGGTGAGATTATTTACAGC 51156 Query 11234 GATAGTTCTGGTCTTCCTAAGCACTATCTTGCTGGTCATGACGTTGAAGAGTTTATTGGC 11293 ||| | |||| | || ||||||||| | ||||| || || || |||||||| || || Sbjct 51155 GATCATACTGGCTTACCAAAGCACTATTTAGCTGGCCACGATGTGGAAGAGTTCATCGGT 51096 Query 11294 GTAGTTAAACGTTATGGACCAAGCAAAAATGTTAAGCGACTTATTGAAGTCGCAAAAAAT 11353 || ||||| || | ||| | | | | ||||||||| ||| |||||||||| ||||| Sbjct 51095 GTTGTTAAGCGCTGGGGAGCTAATGACAGTGTTAAGCGGCTTGTTGAAGTCGCTAAAAAC 51036 Query 11354 CCGCCGTTTGTTTCGAATCTTGATATTTCAAAATGCTGCGGCAACTGTGTAATCAATTGA 11413 |||||||||||||| || | |||||||| |||||||| || ||||||||||| | ||| Sbjct 51035 CCGCCGTTTGTTTCTGATTTAGATATTTCTAAATGCTGTGGAAACTGTGTAATTACCTGA 50976 Query 11414 GCCTAATGGCTC-ttttttttGCCCATTTTGTTATACGTAGTTATACGATGAGGAAGTTA 11472 |||| |||||| ||||||||||| ||| | ||||| | ||| || || | Sbjct 50975 GCCTTTTGGCTCATTTTTTTTGCCATGTTTCCTTGACGTACCTTGACGGATAGAGAGAAA 50916 Query 11473 TGGCGACACTA---AAAGAGCCTGTGAAAATCTTTATAGTTCAGTCTCTTGCT-TGTCGT 11528 |||||||| || ||| ||| |||| ||||||| || || || |||||| ||| | Sbjct 50915 TGGCGACATTAAACAAAAAGC---AGAAACTCTTTATTGTACAATCGCTTGCTGTGT-TT 50860 Query 11529 GATACACCTCAAGAAGTGGCTGAACTCGTAAAACAAGAGTTTGGCGTTGATATAGATCGT 11588 | || ||||||||| | ||||| || | || |||| | ||||| | ||| Sbjct 50859 AACACCCCTCAAGAAACAGTAAGTCTCGTCAAGGAGGAATTTGACATTGATGT--TTCGA 50802 Query 11589 G--TTCAAGTTGCAACTTATGACCCTACAAAGGTTGCTGGTAAGAACTTAAGCAA 11641 | || || | | ||||||||||||||| ||||||| | ||||||| || Sbjct 50801 GACAGCAGGTAGAGTCATATGACCCTACAAAGTTTGCTGGGAGAGACTTAAGTAA 50747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144988260989964