Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq27488 309 9e-80 seq28098 250 7e-62 seq19111 178 4e-40 seq22221 165 2e-36 seq28665 149 2e-31 seq27610 147 6e-31 seq25466 138 3e-28 seq30576 129 2e-25 seq11702 127 6e-25 seq24854 122 2e-23 seq30254 120 9e-23 seq30476 113 1e-20 seq1393 113 1e-20 seq1037 111 4e-20 seq24565 96.9 1e-15 seq31809 89.7 1e-13 >seq27488 Length=630907 Score = 309 bits (342), Expect = 9e-80 Identities = 212/238 (89%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 6903 CGGGGGATCCGGCGCGCGAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCAG 6962 ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||| Sbjct 364665 CGGGGGATCCGGCGCGCGAATTCCCCATGATTCACTCCACTCCGCTGATGCTGCTGCCAC 364606 Query 6963 ACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGTCGGGCC 7022 |||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||| Sbjct 364605 ACCCTGACGCATTCGTCTCCGTTTA-CTGGCATGACTTCCCCCAGTGGCCCTGTCGGGCC 364547 Query 7023 ACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAAC 7082 |||||| ||||||||||||| ||||| ||||||| || ||| || | ||||||||||| | Sbjct 364546 ACCTTTGTGGAGTATTTCCCCTGACATAAAAAGACAATCTGATCCCTCGCCTGAATGACC 364487 Query 7083 TTGGGACCCAGCTTAACCGCGAGGTCAGTACCAGCGGCACCATTCAGGAACTGACGAT 7140 |||| || ||||||||||||||||||| ||| ||||||| ||||||||||| || || Sbjct 364486 TTGGCACTCAGCTTAACCGCGAGGTCACCACCTGCGGCACGATTCAGGAACTTACCAT 364429 >seq28098 Length=251556 Score = 250 bits (276), Expect = 7e-62 Identities = 285/389 (73%), Gaps = 10/389 (3%) Strand=Plus/Minus Query 7024 CCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAACT 7083 |||| | ||||||||||| |||||||| || ||||| ||| |||| ||||||||||| || Sbjct 85165 CCTTACAGGAGTATTTCCTATGACAGATAACGAAAAACTGATCGCTCGCCTGAATGACCT 85106 Query 7084 TGGGACCCAGCTTAACCGCGAGGTCAGTACCAGCGGCACCATTCAGGAACTGACGATGCG 7143 ||| || || |||||||||||||||| |||| |||||| ||||| ||||| || ||||| Sbjct 85105 TGGCACTCAACTTAACCGCGAGGTCATCACCATCGGCACGATTCATGAACTTACCATGCG 85046 Query 7144 TATTGCTGAGCTTGAAGAGGAACTGGATGGCAATGCCGGGTCAGTTGACGGTGAAAACGG 7203 ||||||||| || |||| || |||||||| ||||| | || ||||||||||| |||| Sbjct 85045 TATTGCTGACCTGAAAGACGAGCTGGATGGTGATGCCAGTTCGATTGACGGTGAATACGG 84986 Query 7204 CGTGCAGAATGCT---------TCCGACAGCANNNNNNNNNNNNNNNNNNATGTTGCTAA 7254 | | |||||||| |||||| ||| |||| | Sbjct 84985 AGAGAAGAATGCTCCCGACAGCTCCGACGGCACCGACAGCACCGACAGAGATGTACATGG 84926 Query 7255 CGTGGCAAAAGTAAAAACGGAATCGGCCACAACGGGTGACCTGGTATCAGTAGAAACGCT 7314 | || |||||||| || ||| ||| ||| |||| ||||| |||||| ||||| ||| Sbjct 84925 CTCGGAAAAAGTAACAATCGAAGCGGTCACGACGGATGACCGGGTATCGATAGAAGGGCT 84866 Query 7315 GGCCACCCTGCATATTGACGCTCTGCATGCCACGCGTAACGAGCCGGTATCTATCGTAGA 7374 || ||| |||| || |||| || || ||||||| || | || | || ||||| || | Sbjct 84865 GGTGACCTTGCACATAAACGCGCTTCACGCCACGCCTAGCCAGTCTGTGTCTATTGTCAA 84806 Query 7375 GCCTGGT-GTGATTATCCGCGTATCTGAA 7402 ||||||| || ||||||||||| ||||| Sbjct 84805 GCCTGGTGGTCATTATCCGCGTGACTGAA 84777 >seq19111 Length=857609 Score = 178 bits (196), Expect = 4e-40 Identities = 124/140 (89%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 6868 TGCCTCGACACGCTACCCGAAAAACTGGGTGCAGTCGGGGGATCCGGCGCGCGAATTCAC 6927 ||||| |||||||| ||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 856937 TGCCTTGACACGCTTCCCTAAAAACTGGGTGCAATCGGGGGATCCGGCGCGCGAATTCAC 856996 Query 6928 CATGATTCAGTCAGCT--CCGCTGATGCTGCTGCCAGACCCTGACGCATTCGTCTCCGTC 6985 |||||||| | | |||||||||| ||||||| ||||||||||||||||||||||| Sbjct 856997 CATGATTCTTTTTTTTACCCGCTGATGCAGCTGCCATACCCTGACGCATTCGTCTCCGTC 857056 Query 6986 AAACTGGCATAACTTCCCCC 7005 ||||||||||||||| ||| Sbjct 857057 TAACTGGCATAACTTCACCC 857076 >seq22221 Length=2446128 Score = 165 bits (182), Expect = 2e-36 Identities = 167/215 (78%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 7258 GGCAAAAGTAAAAACGGAATCGGCCACAACGGGTGACCTGGTATCAGTAGAAACGCTGGC 7317 || |||||||||||| ||| ||| |||||||| ||||| |||||||||| ||||||||| Sbjct 740775 GGAAAAAGTAAAAACCGAAGCGGTCACAACGGATGACCGGGTATCAGTAAAAACGCTGGT 740716 Query 7318 CACCCTGCATATTGACGCTCTGCATGCCACGCGTAACGAGCCGGTATCTATCGTAGAGCC 7377 ||| |||| || |||| || || ||||||||||||||| | || || || || ||||| Sbjct 740715 GACCTTGCACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCAATTGTCGAGCC 740656 Query 7378 TGGTGTGATTATCCGCGTATCTGAACAGGATGCCGACGACTTGATCGCAAAGGG-GCTGG 7436 |||||| |||||||||| |||| || || ||||| |||| | ||| ||||| Sbjct 740655 TGGTGTCGTTATCCGCGTGACTGACGTAGACGCTAACGACCTGATATCTCGGGGCGCTGG 740596 Query 7437 CTTTCGAAGTCTGA-AGGGGGCCACATGGCTGATT 7470 | ||| ||||| |||||||| |||||||||| Sbjct 740595 CCCGGGAAATCTGACAGGGGGCCTAATGGCTGATT 740561 >seq28665 Length=408771 Score = 149 bits (164), Expect = 2e-31 Identities = 119/142 (84%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 6944 CCGCTGATGCTGCTGCCAGACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCC 7003 |||||||||||||||||| | ||| ||||||||| || |||||||||||||||| Sbjct 384705 CCGCTGATGCTGCTGCCATAACCTCTGCTCTTCGTCTCCATCTTACTGGCATAACTTCCC 384764 Query 7004 CCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTG 7063 ||||| | ||||||||||| ||||||||| |||||||||||||| |||||||||| ||| Sbjct 384765 CCAGTT-CTCTGTCGGGCCAACTTTCTGGAATATTTCCCATGACAAAAAAAGAAAATCTG 384823 Query 7064 GTCGCCCGCCTGAATGAACTTG 7085 |||| | | ||||||| |||| Sbjct 384824 ATCGCTCACTTGAATGACCTTG 384845 >seq27610 Length=727261 Score = 147 bits (162), Expect = 6e-31 Identities = 87/91 (96%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 6990 TGGCATAACTTCCCCCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAG 7049 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 378604 TGGCATAACTTCCCCCAGTGGCCCTGTCGGGCCCCCTTTCTGGAGTATTTCCCATGACAG 378663 Query 7050 AAAAAGAAAAGCTGGTCGCCCGCCTGAATGA 7080 | |||||||||||| |||| ||||||||||| Sbjct 378664 AGAAAGAAAAGCTGATCGCGCGCCTGAATGA 378694 >seq25466 Length=525030 Score = 138 bits (152), Expect = 3e-28 Identities = 130/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 7038 TTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAACTTGGGACCCAGCTTA 7097 |||||||||| || ||| | ||| |||| |||| || ||| ||||| | | |||| Sbjct 238198 TTCCCATGACCTTTAAGGAATATCTGATCGCTCGCCCGACTGACCTTGGCGCTCCTCTTA 238139 Query 7098 ACCGCGAGGTCAGTACCAGCGGCACCATTCAGGAACTGACGATGCGTATTGCTGAGCTTG 7157 ||||||||||| |||| |||||| ||||||||||| ||||||||||||||||| | Sbjct 238138 CACGCGAGGTCAGCACCACCGGCACGATTCAGGAACTTACGATGCGTATTGCTGATTCGG 238079 Query 7158 AAGAGGAACTGGATGGCAATGCCGGGTCAGTTGACGGTGAAAACGG 7203 ||||||| |||||||| ||||| | || ||||| || ||||||| Sbjct 238078 AAGAGGAGCTGGATGGTGATGCCAGTTCTATTGACCGTCAAAACGG 238033 >seq30576 Length=233388 Score = 129 bits (142), Expect = 2e-25 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 7013 CTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGC 7072 |||||||||||||||||||||||||||| ||||| || |||||||||||| |||| ||| Sbjct 17411 CTGTCGGGCCACCTTTCTGGAGTATTTCTGATGACCGAGAAAGAAAAGCTGATCGCTCGC 17470 Query 7073 CTGAATGAACTTGGGACCCAGCTTAACCGCGAGG 7106 |||||||| ||||| || |||||||||||||||| Sbjct 17471 CTGAATGACCTTGGCACTCAGCTTAACCGCGAGG 17504 >seq11702 Length=135243 Score = 127 bits (140), Expect = 6e-25 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 7006 AGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGT 7065 ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| | Sbjct 35508 AGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCCTGACATAGAAAGAAAAGCTGAT 35449 Query 7066 CGCCCGCCTGAATGAACTTGGGACCCAGCTTAACC 7100 ||| ||||||||||| ||||| || || |||| || Sbjct 35448 CGCTCGCCTGAATGACCTTGGCACTCATCTTATCC 35414 >seq24854 Length=376709 Score = 122 bits (134), Expect = 2e-23 Identities = 102/124 (82%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 7258 GGCAAAAGTAAAAACGGAATCGGCCACAACGGGTGACCTGGTATCAGTAGAAA-CGCTGG 7316 || |||||||| ||| ||| ||| |||||||| ||||| |||||||||||||| |||||| Sbjct 56367 GGAAAAAGTAATAACCGAAACGGTCACAACGGATGACCGGGTATCAGTAGAAATCGCTGG 56308 Query 7317 CCACCCTGCATATTGACGCTCTGCATGCCACGCGTAACGAGCCGGTATCTATCGTAGAGC 7376 ||| |||| || |||| || || ||||||||||||||| | || ||||| || |||| Sbjct 56307 TGACCTTGCACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCTATTGTCGAGC 56248 Query 7377 CTGG 7380 |||| Sbjct 56247 CTGG 56244 >seq30254 Length=386871 Score = 120 bits (132), Expect = 9e-23 Identities = 107/133 (80%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 7270 AACGGAATCGGCCACAACGGGTGACCTGGTATCAGTAGAAACGCTGGCCACCCTGCATAT 7329 ||| ||| ||| ||| |||| ||||| |||||||||||||||||||| ||| |||| || Sbjct 70006 AACCGAAGCGGTCACTACGGATGACCGGGTATCAGTAGAAACGCTGGTGACCTTGCACAT 69947 Query 7330 TGACGCTCTGCATGCCACGCGTAACGAGCCGGTATCTATCGTAGAG-CCTGGTGTGATTA 7388 |||| || || ||||||||||||||| | || ||||| || ||| |||||||| ||| Sbjct 69946 AAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCTATTGTCGAGCCCTGGTGTCGTTA 69887 Query 7389 TCCGCGTATCTGA 7401 ||| ||| |||| Sbjct 69886 TCCCCGTGACTGA 69874 >seq30476 Length=421711 Score = 113 bits (124), Expect = 1e-20 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7100 CGCGAGGTCAGTACCAGCGGCACCATTCAGGAACTGACGATGCGTATTGCTGAGCTTGAA 7159 ||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||| ||| Sbjct 396731 CGCGAGGTCAGCACCAGCGGCACGATTCAGGAACTTACGATGCATATTGCTGAGCTGGAA 396790 Query 7160 GAGGAACTGGATGGCAATGCCGGGTCAGTTGACGG 7194 || || |||||||| ||||| | || ||||||| Sbjct 396791 GACGAGCTGGATGGTGATGCCAGTTCGATTGACGG 396825 >seq1393 Length=164408 Score = 113 bits (124), Expect = 1e-20 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 7130 GAACTGACGATGCGTATTGCTGAGCTTGAAGAGGAACTGGATGGCAATGCCGGGTCAGTT 7189 ||||| |||||||||||||||||||| |||||||| |||||||| ||||| | || || Sbjct 96915 GAACTTACGATGCGTATTGCTGAGCTGGAAGAGGAGCTGGATGGTGATGCCAGTTCGATT 96856 Query 7190 GACGGTGAAAACGGCGTGCAGAATGCTTCCGACAGCA 7226 |||||||||||||| | | | |||||| ||||||||| Sbjct 96855 GACGGTGAAAACGGAGAGAAAAATGCTCCCGACAGCA 96819 >seq1037 Length=313920 Score = 111 bits (122), Expect = 4e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 7007 GTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTC 7066 |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| || Sbjct 86578 GTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGACAAATAAAATCTGATC 86637 Query 7067 GCCCGCCTGAATGA 7080 || ||||||||||| Sbjct 86638 GCTCGCCTGAATGA 86651 >seq24565 Length=1293330 Score = 96.9 bits (106), Expect = 1e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7073 CTGAATGAACTTGGGACCCAGCTTAACCGCGAGGTCAGTACCAGCGGCACCATTCAGGAA 7132 |||||||| ||||| | | ||||||||| ||||| |||| ||||| ||||| ||| Sbjct 281999 CTGAATGACCTTGGCATTCTTCTTAACCGCTAGGTCGTCACCATCGGCATGATTCAAGAA 282058 Query 7133 CTGACGATGCGTATTGCTGAGCTTGAAGAGGAACTGGATGGCAATGCC 7180 | || | ||||||||||||||| ||| |||| ||||||||| ||||| Sbjct 282059 GTTACCACGCGTATTGCTGAGCTGGAAAAGGATCTGGATGGCGATGCC 282106 >seq31809 Length=272917 Score = 89.7 bits (98), Expect = 1e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 7025 CTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAACTT 7084 ||||||| | |||||||| |||| ||||| ||| | |||| ||||||||||| ||| Sbjct 183416 CTTTCTGAATTATTTCCCTTGACCAAAAAATAAATTTCGATCGCTCGCCTGAATGACCTT 183475 Query 7085 GGGACCCAGCTTAACCGCGAGGTCAGTACCAGCGGCACCATT 7126 || || || |||||||| ||||||| |||| |||||| ||| Sbjct 183476 GGCACTCATCTTAACCGAGAGGTCAACACCAACGGCACGATT 183517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141824659743018