Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq27488 304 4e-78 seq28098 237 5e-58 seq19111 178 4e-40 seq22221 159 1e-34 seq28665 149 2e-31 seq27610 147 6e-31 seq25466 138 3e-28 seq30576 129 2e-25 seq11702 127 6e-25 seq30476 118 3e-22 seq1393 116 1e-21 seq24854 113 1e-20 seq30254 111 5e-20 seq1037 111 5e-20 seq24565 89.7 1e-13 seq31809 86.0 2e-12 >seq27488 Length=630907 Score = 304 bits (336), Expect = 4e-78 Identities = 211/238 (89%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 6903 CGGGGGATCCGGCGCGCGAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCAG 6962 ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||| Sbjct 364665 CGGGGGATCCGGCGCGCGAATTCCCCATGATTCACTCCACTCCGCTGATGCTGCTGCCAC 364606 Query 6963 ACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGTCGGGCC 7022 |||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||| Sbjct 364605 ACCCTGACGCATTCGTCTCCGTTTA-CTGGCATGACTTCCCCCAGTGGCCCTGTCGGGCC 364547 Query 7023 ACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAAC 7082 |||||| ||||||||||||| ||||| ||||||| || ||| || | ||||||||||| | Sbjct 364546 ACCTTTGTGGAGTATTTCCCCTGACATAAAAAGACAATCTGATCCCTCGCCTGAATGACC 364487 Query 7083 TTGGGACCCAGCTTAACCGCGAGGTCAGTTCCAGCGGCACCATTCAGGAACTAACGAT 7140 |||| || ||||||||||||||||||| || ||||||| ||||||||||| || || Sbjct 364486 TTGGCACTCAGCTTAACCGCGAGGTCACCACCTGCGGCACGATTCAGGAACTTACCAT 364429 >seq28098 Length=251556 Score = 237 bits (262), Expect = 5e-58 Identities = 281/389 (72%), Gaps = 1/389 (0%) Strand=Plus/Minus Query 7024 CCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAACT 7083 |||| | ||||||||||| |||||||| || ||||| ||| |||| ||||||||||| || Sbjct 85165 CCTTACAGGAGTATTTCCTATGACAGATAACGAAAAACTGATCGCTCGCCTGAATGACCT 85106 Query 7084 TGGGACCCAGCTTAACCGCGAGGTCAGTTCCAGCGGCACCATTCAGGAACTAACGATGCG 7143 ||| || || |||||||||||||||| ||| |||||| ||||| ||||| || ||||| Sbjct 85105 TGGCACTCAACTTAACCGCGAGGTCATCACCATCGGCACGATTCATGAACTTACCATGCG 85046 Query 7144 TATTGCTGAGCTTGAAGAGGAGCTGGATGGAGACGCCATCTCGGTTGACGGTAAAAACGG 7203 ||||||||| || |||| ||||||||||| || |||| ||| |||||||| || |||| Sbjct 85045 TATTGCTGACCTGAAAGACGAGCTGGATGGTGATGCCAGTTCGATTGACGGTGAATACGG 84986 Query 7204 CGTGCAGAATGCTTCCGACAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGCTAA 7263 | | |||||||| |||||||| ||| | Sbjct 84985 AGAGAAGAATGCTCCCGACAGCTCCGACGGCACCGACAGCACCGACAGAGATGTACATGG 84926 Query 7264 CGTGGCAAAAGTAAAAACGGAATCGGCCACAACGGGTGACCTGGTATCAGTAGAAACGCT 7323 | || |||||||| || ||| ||| ||| |||| ||||| |||||| ||||| ||| Sbjct 84925 CTCGGAAAAAGTAACAATCGAAGCGGTCACGACGGATGACCGGGTATCGATAGAAGGGCT 84866 Query 7324 GGCCACCCTGCATATTGACGCTCTGCATGCCACGCGTAACGAACCGGTATCCATCGTAGA 7383 || ||| |||| || |||| || || ||||||| || | | | || || || || | Sbjct 84865 GGTGACCTTGCACATAAACGCGCTTCACGCCACGCCTAGCCAGTCTGTGTCTATTGTCAA 84806 Query 7384 GCCTGGT-GTGATTATCCGCGTATCTGAA 7411 ||||||| || ||||||||||| ||||| Sbjct 84805 GCCTGGTGGTCATTATCCGCGTGACTGAA 84777 >seq19111 Length=857609 Score = 178 bits (196), Expect = 4e-40 Identities = 124/140 (89%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 6868 TGCCTCGACACGCTACCCGAAAAACTGGGTGCAGTCGGGGGATCCGGCGCGCGAATTCAC 6927 ||||| |||||||| ||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 856937 TGCCTTGACACGCTTCCCTAAAAACTGGGTGCAATCGGGGGATCCGGCGCGCGAATTCAC 856996 Query 6928 CATGATTCAGTCAGCT--CCGCTGATGCTGCTGCCAGACCCTGACGCATTCGTCTCCGTC 6985 |||||||| | | |||||||||| ||||||| ||||||||||||||||||||||| Sbjct 856997 CATGATTCTTTTTTTTACCCGCTGATGCAGCTGCCATACCCTGACGCATTCGTCTCCGTC 857056 Query 6986 AAACTGGCATAACTTCCCCC 7005 ||||||||||||||| ||| Sbjct 857057 TAACTGGCATAACTTCACCC 857076 >seq22221 Length=2446128 Score = 159 bits (176), Expect = 1e-34 Identities = 166/215 (77%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 7267 GGCAAAAGTAAAAACGGAATCGGCCACAACGGGTGACCTGGTATCAGTAGAAACGCTGGC 7326 || |||||||||||| ||| ||| |||||||| ||||| |||||||||| ||||||||| Sbjct 740775 GGAAAAAGTAAAAACCGAAGCGGTCACAACGGATGACCGGGTATCAGTAAAAACGCTGGT 740716 Query 7327 CACCCTGCATATTGACGCTCTGCATGCCACGCGTAACGAACCGGTATCCATCGTAGAGCC 7386 ||| |||| || |||| || || |||||||||||||| | || || || || ||||| Sbjct 740715 GACCTTGCACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCAATTGTCGAGCC 740656 Query 7387 TGGTGTGATTATCCGCGTATCTGAACAGGATGCCGACGACTTGATCGCAAAGGG-GCTGG 7445 |||||| |||||||||| |||| || || ||||| |||| | ||| ||||| Sbjct 740655 TGGTGTCGTTATCCGCGTGACTGACGTAGACGCTAACGACCTGATATCTCGGGGCGCTGG 740596 Query 7446 CTTTCGAAGTCTGA-AGGGGGCCACATGGCTGATT 7479 | ||| ||||| |||||||| |||||||||| Sbjct 740595 CCCGGGAAATCTGACAGGGGGCCTAATGGCTGATT 740561 >seq28665 Length=408771 Score = 149 bits (164), Expect = 2e-31 Identities = 119/142 (84%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 6944 CCGCTGATGCTGCTGCCAGACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCC 7003 |||||||||||||||||| | ||| ||||||||| || |||||||||||||||| Sbjct 384705 CCGCTGATGCTGCTGCCATAACCTCTGCTCTTCGTCTCCATCTTACTGGCATAACTTCCC 384764 Query 7004 CCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTG 7063 ||||| | ||||||||||| ||||||||| |||||||||||||| |||||||||| ||| Sbjct 384765 CCAGTT-CTCTGTCGGGCCAACTTTCTGGAATATTTCCCATGACAAAAAAAGAAAATCTG 384823 Query 7064 GTCGCCCGCCTGAATGAACTTG 7085 |||| | | ||||||| |||| Sbjct 384824 ATCGCTCACTTGAATGACCTTG 384845 >seq27610 Length=727261 Score = 147 bits (162), Expect = 6e-31 Identities = 87/91 (96%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 6990 TGGCATAACTTCCCCCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAG 7049 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 378604 TGGCATAACTTCCCCCAGTGGCCCTGTCGGGCCCCCTTTCTGGAGTATTTCCCATGACAG 378663 Query 7050 AAAAAGAAAAGCTGGTCGCCCGCCTGAATGA 7080 | |||||||||||| |||| ||||||||||| Sbjct 378664 AGAAAGAAAAGCTGATCGCGCGCCTGAATGA 378694 >seq25466 Length=525030 Score = 138 bits (152), Expect = 3e-28 Identities = 130/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 7038 TTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAACTTGGGACCCAGCTTA 7097 |||||||||| || ||| | ||| |||| |||| || ||| ||||| | | |||| Sbjct 238198 TTCCCATGACCTTTAAGGAATATCTGATCGCTCGCCCGACTGACCTTGGCGCTCCTCTTA 238139 Query 7098 ACCGCGAGGTCAGTTCCAGCGGCACCATTCAGGAACTAACGATGCGTATTGCTGAGCTTG 7157 ||||||||||| ||| |||||| ||||||||||| ||||||||||||||||| | Sbjct 238138 CACGCGAGGTCAGCACCACCGGCACGATTCAGGAACTTACGATGCGTATTGCTGATTCGG 238079 Query 7158 AAGAGGAGCTGGATGGAGACGCCATCTCGGTTGACGGTAAAAACGG 7203 |||||||||||||||| || |||| || ||||| || ||||||| Sbjct 238078 AAGAGGAGCTGGATGGTGATGCCAGTTCTATTGACCGTCAAAACGG 238033 >seq30576 Length=233388 Score = 129 bits (142), Expect = 2e-25 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 7013 CTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGC 7072 |||||||||||||||||||||||||||| ||||| || |||||||||||| |||| ||| Sbjct 17411 CTGTCGGGCCACCTTTCTGGAGTATTTCTGATGACCGAGAAAGAAAAGCTGATCGCTCGC 17470 Query 7073 CTGAATGAACTTGGGACCCAGCTTAACCGCGAGG 7106 |||||||| ||||| || |||||||||||||||| Sbjct 17471 CTGAATGACCTTGGCACTCAGCTTAACCGCGAGG 17504 >seq11702 Length=135243 Score = 127 bits (140), Expect = 6e-25 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 7006 AGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGT 7065 ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| | Sbjct 35508 AGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCCTGACATAGAAAGAAAAGCTGAT 35449 Query 7066 CGCCCGCCTGAATGAACTTGGGACCCAGCTTAACC 7100 ||| ||||||||||| ||||| || || |||| || Sbjct 35448 CGCTCGCCTGAATGACCTTGGCACTCATCTTATCC 35414 >seq30476 Length=421711 Score = 118 bits (130), Expect = 3e-22 Identities = 83/95 (87%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7100 CGCGAGGTCAGTTCCAGCGGCACCATTCAGGAACTAACGATGCGTATTGCTGAGCTTGAA 7159 ||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||| ||| Sbjct 396731 CGCGAGGTCAGCACCAGCGGCACGATTCAGGAACTTACGATGCATATTGCTGAGCTGGAA 396790 Query 7160 GAGGAGCTGGATGGAGACGCCATCTCGGTTGACGG 7194 || ||||||||||| || |||| ||| ||||||| Sbjct 396791 GACGAGCTGGATGGTGATGCCAGTTCGATTGACGG 396825 >seq1393 Length=164408 Score = 116 bits (128), Expect = 1e-21 Identities = 84/97 (87%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 7130 GAACTAACGATGCGTATTGCTGAGCTTGAAGAGGAGCTGGATGGAGACGCCATCTCGGTT 7189 ||||| |||||||||||||||||||| ||||||||||||||||| || |||| ||| || Sbjct 96915 GAACTTACGATGCGTATTGCTGAGCTGGAAGAGGAGCTGGATGGTGATGCCAGTTCGATT 96856 Query 7190 GACGGTAAAAACGGCGTGCAGAATGCTTCCGACAGCA 7226 |||||| ||||||| | | | |||||| ||||||||| Sbjct 96855 GACGGTGAAAACGGAGAGAAAAATGCTCCCGACAGCA 96819 >seq24854 Length=376709 Score = 113 bits (124), Expect = 1e-20 Identities = 100/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 7267 GGCAAAAGTAAAAACGGAATCGGCCACAACGGGTGACCTGGTATCAGTAGAAA-CGCTGG 7325 || |||||||| ||| ||| ||| |||||||| ||||| |||||||||||||| |||||| Sbjct 56367 GGAAAAAGTAATAACCGAAACGGTCACAACGGATGACCGGGTATCAGTAGAAATCGCTGG 56308 Query 7326 CCACCCTGCATATTGACGCTCTGCATGCCACGCGTAACGAACCGGTATCCATCGTAGAGC 7385 ||| |||| || |||| || || |||||||||||||| | || || || || |||| Sbjct 56307 TGACCTTGCACATAAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCTATTGTCGAGC 56248 Query 7386 CTGG 7389 |||| Sbjct 56247 CTGG 56244 >seq30254 Length=386871 Score = 111 bits (122), Expect = 5e-20 Identities = 105/133 (79%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 7279 AACGGAATCGGCCACAACGGGTGACCTGGTATCAGTAGAAACGCTGGCCACCCTGCATAT 7338 ||| ||| ||| ||| |||| ||||| |||||||||||||||||||| ||| |||| || Sbjct 70006 AACCGAAGCGGTCACTACGGATGACCGGGTATCAGTAGAAACGCTGGTGACCTTGCACAT 69947 Query 7339 TGACGCTCTGCATGCCACGCGTAACGAACCGGTATCCATCGTAGAG-CCTGGTGTGATTA 7397 |||| || || |||||||||||||| | || || || || ||| |||||||| ||| Sbjct 69946 AAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCTATTGTCGAGCCCTGGTGTCGTTA 69887 Query 7398 TCCGCGTATCTGA 7410 ||| ||| |||| Sbjct 69886 TCCCCGTGACTGA 69874 >seq1037 Length=313920 Score = 111 bits (122), Expect = 5e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 7007 GTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTC 7066 |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| || Sbjct 86578 GTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGACAAATAAAATCTGATC 86637 Query 7067 GCCCGCCTGAATGA 7080 || ||||||||||| Sbjct 86638 GCTCGCCTGAATGA 86651 >seq24565 Length=1293330 Score = 89.7 bits (98), Expect = 1e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 7073 CTGAATGAACTTGGGACCCAGCTTAACCGCGAGGTCAGTTCCAGCGGCACCATTCAGGAA 7132 |||||||| ||||| | | ||||||||| ||||| ||| ||||| ||||| ||| Sbjct 281999 CTGAATGACCTTGGCATTCTTCTTAACCGCTAGGTCGTCACCATCGGCATGATTCAAGAA 282058 Query 7133 CTAACGATGCGTATTGCTGAGCTTGAAGAGGAGCTGGATGGAGACGCCA 7181 | || | ||||||||||||||| ||| |||| |||||||| || |||| Sbjct 282059 GTTACCACGCGTATTGCTGAGCTGGAAAAGGATCTGGATGGCGATGCCA 282107 >seq31809 Length=272917 Score = 86.0 bits (94), Expect = 2e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 7025 CTTTCTGGAGTATTTCCCATGACAGAAAAAGAAAAGCTGGTCGCCCGCCTGAATGAACTT 7084 ||||||| | |||||||| |||| ||||| ||| | |||| ||||||||||| ||| Sbjct 183416 CTTTCTGAATTATTTCCCTTGACCAAAAAATAAATTTCGATCGCTCGCCTGAATGACCTT 183475 Query 7085 GGGACCCAGCTTAACCGCGAGGTCAGTTCCAGCGGCACCATT 7126 || || || |||||||| ||||||| ||| |||||| ||| Sbjct 183476 GGCACTCATCTTAACCGAGAGGTCAACACCAACGGCACGATT 183517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144994658565792