Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_019725.1 Length=50552 Score E Sequences producing significant alignments: (Bits) Value seq28821 1178 0.0 >seq28821 Length=465073 Score = 1178 bits (1306), Expect = 0.0 Identities = 801/899 (89%), Gaps = 4/899 (0%) Strand=Plus/Minus Query 2585 TCTCTCCGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGGTAAGCATC 2644 |||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||| Sbjct 124321 TCTCTCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATC 124262 Query 2645 GCGCGGCGCAATATACATCGGGAACCAGGGGTGTGAGTCATTCTCAGGAAGATAGCCGCC 2704 ||||||||| |||||||||||||||||||| || | |||||||||||||||||||||||| Sbjct 124261 GCGCGGCGCGATATACATCGGGAACCAGGGATGCGCGTCATTCTCAGGAAGATAGCCGCC 124202 Query 2705 ATACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAGGACGCTTAC 2764 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || Sbjct 124201 ATACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCAC 124142 Query 2765 CGGATTCTCAATGATGTAAGTCACGCCTA-GCTATCGCCAATGTTCGCAGCAATCCGGGC 2823 |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| ||||| Sbjct 124141 CGGATTCTCAATTATGTAAGTCACGCCCATGCTATCGCCAATGTTCGCGGCAATACGGGC 124082 Query 2824 AGTAGCGACAGCCTTCTCCTGGAATAACGGATCGCGTTCACGCTTGCTTGCAAAATGGCG 2883 |||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||| Sbjct 124081 AGTAGCGACAGCTTTCTCCTGGAATAGCGGATCACGTTCACGCTTGCTGGCAAAATGGCG 124022 Query 2884 AGCGCCACTAACAGCCAGGTCAGTGCAAGGAGGGAAAGCCATAATGAAATCCGGCTTGCC 2943 ||| ||||||||||| ||||||||||| ||| |||| |||||||| |||||||| ||| | Sbjct 124021 AGCACCACTAACAGCAAGGTCAGTGCATGGATGGAAGGCCATAATAAAATCCGGTTTGTC 123962 Query 2944 ATACACACCAGAGATAGCATCACGCTCAAACGCTGCGTCAATGAACACGTTCACATACTC 3003 ||||||||| | ||| | |||||| || ||| | |||||||| |||||||||||||| Sbjct 123961 ATACACACCCGCGATCGTATCACGTTCGAACTTCTCATCAATGAAGACGTTCACATACTC 123902 Query 3004 AATGTTCGGATGCTCCACTCTGGCATTGTACTTTGCGTAATCTCCGTGATCGGCTCCGTC 3063 ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| Sbjct 123901 AATGTTCGGATGCTCTACCCTGGCGTTGTACTTTGCGTAATCTCCGTGATCGGCTCCGTC 123842 Query 3064 AAAGTTGAAGCACATCACCTTATGACCTTGCTTTGCCAGTTCATAACCAGCAATCCCGGA 3123 |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 123841 AAAGTTGAAGCACATCACCTTATGACCTTGCTTTGCCAGTTCATGGCCAGCAAGACCGGA 123782 Query 3124 ACCGTCGAATAGCGACCAAATTAATTTCATCGTGACTTCCTCTTCTGATTGGTTTATGTG 3183 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 123781 ACCGTCGAATAGTGACCAAATTAATTTCATTGTGACTTCCTCTTCTGATTGGTTGATGGC 123722 Query 3184 CCGGACTATACCCGATCTACCCGACCGAGTCGTTAGCAAAAAATGCTATTCCAATAATTG 3243 ||| ||||||||| || ||| | ||||||||||||| ||||||||||||||||||||| Sbjct 123721 CCGAACTATACCCTGTCAACCTGGTCGAGTCGTTAGCA-AAAATGCTATTCCAATAATTG 123663 Query 3244 CTCATTATTCCATCAGTGCTGTAATAGGTGGAATAATTTTGATTGTGANNNNNNNNNNNN 3303 ||||||||||||||| | ||| |||||||||||||||||||||||| | Sbjct 123662 CTCATTATTCCATCAATACTGGAATAGGTGGAATAATTTTGATTGTTATTGATTGCGAAT 123603 Query 3304 NNNGAAACGTGATTATTGCATGGTGTGCAACAGTTGGTTGATTTGTTGCTTAGAATGCAA 3363 ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 123602 GATGAAACGTGATTATTGCATGGTGTGCAACAGTTGGTTGATTTGTTGCTGAGATTGCAA 123543 Query 3364 TGATTGTGAGAGGGGGGATTTAGTGTTACCCGGTTCGCCTGGTGGTCATCTCCATTTTTA 3423 |||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||||| Sbjct 123542 TGATTGTGAGAGGGAGGATTTAGTGTTGCCCTGTTCGCCTGGTAGTCATCTCCATTTTTA 123483 Query 3424 GCAAAACGTGCTATCGATTACGGTTACACTTGAC-CGCGTGTTAACAGTTGTCTACAAT 3481 |||||| |||||||||||||| || ||||| | || || ||| | ||||||| ||| Sbjct 123482 GCAAAAAGTGCTATCGATTACACTTTAACTTGTCACGACTG-TAATATTTGTCTAGAAT 123425 Score = 417 bits (462), Expect = 3e-112 Identities = 304/350 (87%), Gaps = 2/350 (1%) Strand=Plus/Minus Query 4257 GATGAAGAGGTTCCGGTGAAGAAGCGCCGCAGCCGGAAAAA-GTTAGCTTGGCTGATTGC 4315 || ||||||||||| ||||||||||||||||| |||||||| |||||| |||| |||||| Sbjct 122724 GACGAAGAGGTTCCCGTGAAGAAGCGCCGCAGTCGGAAAAAAGTTAGCCTGGCCGATTGC 122665 Query 4316 TTG-ATTCATTTGATGTTGATGTTAGCAAGCTATCCGATAGCGAGTTAATGGTTCGTGAT 4374 || |||| |||| |||||||| |||| || | |||||||| || ||| |||||| Sbjct 122664 CTGGATTCGTTTGTGGTTGATGTGGGCAAACTGGCTGATAGCGAATTGATGACTCGTGAC 122605 Query 4375 GTGAATGAGATCGTGCGCCAGATGAAGGCACATATCGAAAAGTGTGGACTGTAAGGAGAG 4434 || || |||||||| ||||||||||| || ||||||||||||||||||||||||| | | Sbjct 122604 GTAAACGAGATCGTTCGCCAGATGAAAGCGCATATCGAAAAGTGTGGACTGTAAGAGGTG 122545 Query 4435 ATGAGTATGAGCAAAATTAAGCATGACGCCCTGAAAGGTATCTTGATGCGACTAAACCCA 4494 |||| |||||||| |||||| | ||||| ||||||||| | || |||| |||||| ||| Sbjct 122544 ATGACCATGAGCAAGATTAAGTACGACGCTCTGAAAGGTGTATTAATGCAACTAAATCCA 122485 Query 4495 GGCGAAGCATTCCAGCTTAACCCCGAGACGTTTGGATTCAATGGTGATTATCGTACAACC 4554 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 122484 GGCGAAGCATTTCAGCTTAACCCCGAGACTTTTGGATTCAATGGTGATTATCGTACAACC 122425 Query 4555 TTCGAATTTGTAAGGTATGTAAAGAAAGAGTTTGGATTCGAAGTTATTCA 4604 ||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 122424 TTCGAATTTGTCCGGTATGTAAAGAAGGAGTTTGGATTCGAAGTTATTCA 122375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161583572687796