Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015
-03-10] 31,897 sequences; 990,915,289 total letters
Query= NC_019725.1
Length=50552
Score E
Sequences producing significant alignments: (Bits) Value
seq28821 1178 0.0
>seq28821
Length=465073
Score = 1178 bits (1306), Expect = 0.0
Identities = 801/899 (89%), Gaps = 4/899 (0%)
Strand=Plus/Minus
Query 2585 TCTCTCCGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGGTAAGCATC 2644
|||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 124321 TCTCTCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATC 124262
Query 2645 GCGCGGCGCAATATACATCGGGAACCAGGGGTGTGAGTCATTCTCAGGAAGATAGCCGCC 2704
||||||||| |||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 124261 GCGCGGCGCGATATACATCGGGAACCAGGGATGCGCGTCATTCTCAGGAAGATAGCCGCC 124202
Query 2705 ATACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAGGACGCTTAC 2764
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 124201 ATACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCAC 124142
Query 2765 CGGATTCTCAATGATGTAAGTCACGCCTA-GCTATCGCCAATGTTCGCAGCAATCCGGGC 2823
|||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct 124141 CGGATTCTCAATTATGTAAGTCACGCCCATGCTATCGCCAATGTTCGCGGCAATACGGGC 124082
Query 2824 AGTAGCGACAGCCTTCTCCTGGAATAACGGATCGCGTTCACGCTTGCTTGCAAAATGGCG 2883
|||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||
Sbjct 124081 AGTAGCGACAGCTTTCTCCTGGAATAGCGGATCACGTTCACGCTTGCTGGCAAAATGGCG 124022
Query 2884 AGCGCCACTAACAGCCAGGTCAGTGCAAGGAGGGAAAGCCATAATGAAATCCGGCTTGCC 2943
||| ||||||||||| ||||||||||| ||| |||| |||||||| |||||||| ||| |
Sbjct 124021 AGCACCACTAACAGCAAGGTCAGTGCATGGATGGAAGGCCATAATAAAATCCGGTTTGTC 123962
Query 2944 ATACACACCAGAGATAGCATCACGCTCAAACGCTGCGTCAATGAACACGTTCACATACTC 3003
||||||||| | ||| | |||||| || ||| | |||||||| ||||||||||||||
Sbjct 123961 ATACACACCCGCGATCGTATCACGTTCGAACTTCTCATCAATGAAGACGTTCACATACTC 123902
Query 3004 AATGTTCGGATGCTCCACTCTGGCATTGTACTTTGCGTAATCTCCGTGATCGGCTCCGTC 3063
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 123901 AATGTTCGGATGCTCTACCCTGGCGTTGTACTTTGCGTAATCTCCGTGATCGGCTCCGTC 123842
Query 3064 AAAGTTGAAGCACATCACCTTATGACCTTGCTTTGCCAGTTCATAACCAGCAATCCCGGA 3123
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 123841 AAAGTTGAAGCACATCACCTTATGACCTTGCTTTGCCAGTTCATGGCCAGCAAGACCGGA 123782
Query 3124 ACCGTCGAATAGCGACCAAATTAATTTCATCGTGACTTCCTCTTCTGATTGGTTTATGTG 3183
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 123781 ACCGTCGAATAGTGACCAAATTAATTTCATTGTGACTTCCTCTTCTGATTGGTTGATGGC 123722
Query 3184 CCGGACTATACCCGATCTACCCGACCGAGTCGTTAGCAAAAAATGCTATTCCAATAATTG 3243
||| ||||||||| || ||| | ||||||||||||| |||||||||||||||||||||
Sbjct 123721 CCGAACTATACCCTGTCAACCTGGTCGAGTCGTTAGCA-AAAATGCTATTCCAATAATTG 123663
Query 3244 CTCATTATTCCATCAGTGCTGTAATAGGTGGAATAATTTTGATTGTGANNNNNNNNNNNN 3303
||||||||||||||| | ||| |||||||||||||||||||||||| |
Sbjct 123662 CTCATTATTCCATCAATACTGGAATAGGTGGAATAATTTTGATTGTTATTGATTGCGAAT 123603
Query 3304 NNNGAAACGTGATTATTGCATGGTGTGCAACAGTTGGTTGATTTGTTGCTTAGAATGCAA 3363
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 123602 GATGAAACGTGATTATTGCATGGTGTGCAACAGTTGGTTGATTTGTTGCTGAGATTGCAA 123543
Query 3364 TGATTGTGAGAGGGGGGATTTAGTGTTACCCGGTTCGCCTGGTGGTCATCTCCATTTTTA 3423
|||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||||
Sbjct 123542 TGATTGTGAGAGGGAGGATTTAGTGTTGCCCTGTTCGCCTGGTAGTCATCTCCATTTTTA 123483
Query 3424 GCAAAACGTGCTATCGATTACGGTTACACTTGAC-CGCGTGTTAACAGTTGTCTACAAT 3481
|||||| |||||||||||||| || ||||| | || || ||| | ||||||| |||
Sbjct 123482 GCAAAAAGTGCTATCGATTACACTTTAACTTGTCACGACTG-TAATATTTGTCTAGAAT 123425
Score = 417 bits (462), Expect = 3e-112
Identities = 304/350 (87%), Gaps = 2/350 (1%)
Strand=Plus/Minus
Query 4257 GATGAAGAGGTTCCGGTGAAGAAGCGCCGCAGCCGGAAAAA-GTTAGCTTGGCTGATTGC 4315
|| ||||||||||| ||||||||||||||||| |||||||| |||||| |||| ||||||
Sbjct 122724 GACGAAGAGGTTCCCGTGAAGAAGCGCCGCAGTCGGAAAAAAGTTAGCCTGGCCGATTGC 122665
Query 4316 TTG-ATTCATTTGATGTTGATGTTAGCAAGCTATCCGATAGCGAGTTAATGGTTCGTGAT 4374
|| |||| |||| |||||||| |||| || | |||||||| || ||| ||||||
Sbjct 122664 CTGGATTCGTTTGTGGTTGATGTGGGCAAACTGGCTGATAGCGAATTGATGACTCGTGAC 122605
Query 4375 GTGAATGAGATCGTGCGCCAGATGAAGGCACATATCGAAAAGTGTGGACTGTAAGGAGAG 4434
|| || |||||||| ||||||||||| || ||||||||||||||||||||||||| | |
Sbjct 122604 GTAAACGAGATCGTTCGCCAGATGAAAGCGCATATCGAAAAGTGTGGACTGTAAGAGGTG 122545
Query 4435 ATGAGTATGAGCAAAATTAAGCATGACGCCCTGAAAGGTATCTTGATGCGACTAAACCCA 4494
|||| |||||||| |||||| | ||||| ||||||||| | || |||| |||||| |||
Sbjct 122544 ATGACCATGAGCAAGATTAAGTACGACGCTCTGAAAGGTGTATTAATGCAACTAAATCCA 122485
Query 4495 GGCGAAGCATTCCAGCTTAACCCCGAGACGTTTGGATTCAATGGTGATTATCGTACAACC 4554
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 122484 GGCGAAGCATTTCAGCTTAACCCCGAGACTTTTGGATTCAATGGTGATTATCGTACAACC 122425
Query 4555 TTCGAATTTGTAAGGTATGTAAAGAAAGAGTTTGGATTCGAAGTTATTCA 4604
||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 122424 TTCGAATTTGTCCGGTATGTAAAGAAGGAGTTTGGATTCGAAGTTATTCA 122375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 161583572687796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |