Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq670 118 1e-20 seq26121 116 5e-20 seq12446 114 2e-19 seq115 114 2e-19 seq28442 111 2e-18 seq17666 111 2e-18 seq8890 111 2e-18 seq16078 105 8e-17 seq14468 105 8e-17 seq1315 105 8e-17 seq24366 96.9 4e-14 seq13845 86.0 8e-11 >seq670 Length=825618 Score = 118 bits (130), Expect = 1e-20 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| || | | || ||||| || || |||||||||||||| ||| || Sbjct 198484 GCTTGGCCAGTTCTCCTGGGAGGAGAAGGCGAACAGCAGTCTGGATCTCGCGGCTGCTGA 198425 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| |||| ||| | | | | ||||||| ||||| | |||| | ||| | Sbjct 198424 TCGTGCTGCGTCGGTTGGCGCGAGTCAGACGGGAAGCCTCTCCGGCGATCCTCCCGAAGA 198365 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACA-TCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 | || ||||| || |||||| || |||| || || | |||||||||| ||||||| Sbjct 198364 TATCATTGACGAAGCTGTTCATCACAGACATTCCAC-GGCTGGAGATGCCAGTGTCGGGG 198306 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 || |||||||| ||||| ||||||||| Sbjct 198305 TGAACCTGCTTCAGCACTTTGTAGATG 198279 >seq26121 Length=543453 Score = 116 bits (128), Expect = 5e-20 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 869715 CCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAA 869774 ||| |||||| |||||||| |||||||| || || ||||| || || ||| ||| | Sbjct 58764 CCAAGTTCTCATTGACGATGCCATCGCTGGCTGCAAAGAAAGCAAGAACATGCGAGATGA 58823 Query 869775 AGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCACCT 869834 |||| | ||| ||||| | || |||||||| | ||| | ||||| |||| Sbjct 58824 AGTGTCTCTCTTCGTCCTTAAGATTGGCCCAGTGGTCAAGGTCCTTGGACAGGTCAACCT 58883 Query 869835 CCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGGTAGC 869894 |||| |||||||||| || ||||||||||| ||||| | || ||| | | ||||| Sbjct 58884 CCTCAGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTAGAACTGCCAGATGTCGTGGTACT 58943 Query 869895 GGATAGGGAAGAGGACAAAGCG 869916 |||| ||||||| ||| ||||| Sbjct 58944 GGATGGGGAAGATGACGAAGCG 58965 Score = 102 bits (112), Expect = 1e-15 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||| | ||||| | ||| ||| |||| || ||||||||||| || ||||||||| Sbjct 56963 TCGTCTCTGCTGATGAGTTCATTGGAGAAGGTAAGACCGGGCATGAGTCCTCGCTTCTTG 57022 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCG 869302 ||||| ||||| ||| |||| ||| ||||| ||||||||||| || || |||||| || Sbjct 57023 AGCCAGAAGATTGCGGCGAAAGAGCCTGAGAAGAAGATGCCCTCCACTGCTGCAAAGGCG 57082 Query 869303 A 869303 | Sbjct 57083 A 57083 >seq12446 Length=975103 Score = 114 bits (126), Expect = 2e-19 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | || || | || |||||||||| ||| || || || Sbjct 755740 GCTTGGCCAGCTCTCCGGGGAGGAGGAGTCTGACAGCGGTCTGGACCTCACGGCTGGTGA 755799 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| |||| || |||||| ||||||| | ||||||| |||| | Sbjct 755800 TGGTGGACTTCTTGTTGTAGTGGGCAAGACGGGAAGCCTCGGCGGCGATGCGCTCGAAGA 755859 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||| || |||||||| ||||| | | ||||||| || ||| |||| Sbjct 755860 CATCGTTGACGAAACTGTTCATGATGGACATGGCACGGCTGGAGATACCAGTGTCAGGGT 755919 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 755920 GAACCTGCTTCAGCACCTTGTAGATG 755945 >seq115 Length=1158593 Score = 114 bits (126), Expect = 2e-19 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | || || || || |||||||||||||| || ||| || Sbjct 994209 GCTTGGCCAGCTCTCCGGGGAGGAGGAGACGGACAGCGGTCTGGATCTCTCGGCTGCTGA 994268 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || ||||| ||||| | ||||||| | || | Sbjct 994269 TGGTGGACTTCTTGTTGTAGAGGGCAAGACGAGAAGCCTCACCGGCGATGCGCTGGAAGA 994328 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || || |||||||| ||||| | |||| | ||||| || |||||||| Sbjct 994329 CGTCGTTAACGAAGCTGTTCATGATGGACATGGCCTTGCTTGAGATACCAGTGTCGGGGT 994388 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || |||||||||||| Sbjct 994389 GGACCTGCTTCAGAACCTTGTAGATG 994414 >seq28442 Length=432612 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | || || || || |||||||||||||| || ||| || Sbjct 177846 GCTTGGCCAGCTCTCCGGGGAGGAGGAGACGGACAGCGGTCTGGATCTCTCGGCTGCTGA 177905 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| | | || |||||| | || | | ||||| |||| | Sbjct 177906 TGGTGGACTTCTTGTTGTACTTGGCAAGACGGGAAGATTCACCGGCAATGCGCTCGAAGA 177965 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||| || |||||||| ||||| | |||| ||||||| || |||||||| Sbjct 177966 CATCGTTGACGAAGCTGTTCATGATGGACATGGCCTTGCTGGAGATACCAGTGTCGGGGT 178025 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || |||||||||||| Sbjct 178026 GGACCTGCTTCAGAACCTTGTAGATG 178051 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | || || || || |||||||||||||| || ||| || Sbjct 182625 GCTTGGCCAGCTCTCCGGGGAGGAGGAGACGGACAGCGGTCTGGATCTCTCGGCTGCTGA 182684 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| | | || |||||| | || | | ||||| |||| | Sbjct 182685 TGGTGGACTTCTTGTTGTACTTGGCAAGACGGGAAGATTCACCGGCAATGCGCTCGAAGA 182744 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||| || |||||||| ||||| | |||| ||||||| || |||||||| Sbjct 182745 CATCGTTGACGAAGCTGTTCATGATGGACATGGCCTTGCTGGAGATACCAGTGTCGGGGT 182804 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || |||||||||||| Sbjct 182805 GGACCTGCTTCAGAACCTTGTAGATG 182830 >seq17666 Length=829387 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | || || | || |||||||||| ||| || || || Sbjct 82676 GCTTGGCCAGCTCTCCGGGGAGGAGGAGTCTGACAGCGGTCTGGACCTCACGGCTGGTGA 82617 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| |||| || |||||| ||||||| | ||||||| |||| | Sbjct 82616 TGGTAGACTTCTTGTTGTAGTGGGCAAGACGGGAAGCCTCGGCGGCGATGCGCTCGAAGA 82557 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||| || |||||||| ||||| | | ||||||| || |||||||| Sbjct 82556 CATCGTTGACGAAGCTGTTCATGATGGACATGGCACGGCTGGAGATACCAGTGTCGGGGT 82497 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || |||||||||||| Sbjct 82496 GGACCTGCTTCAGAACCTTGTAGATG 82471 >seq8890 Length=1784703 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| | | || || || || |||||||||||||| || ||| || Sbjct 1104340 GCTTGGCCAACTCTCCGGGGAGGAGGAGACGGACAGCGGTCTGGATCTCTCGGCTGCTGA 1104281 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| | | || |||||| | || || ||||||| || | | Sbjct 1104280 TGGTGGACTTCTTGTTGTACTTGGCAAGACGGGAAGATTCATTGGCGATGCGCTCAAAGA 1104221 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||| || |||||||| ||||| | |||| ||||||| || |||||||| Sbjct 1104220 CATCGTTGACGAAGCTGTTCATGATGGACATGGCCTTGCTGGAGATACCAGTGTCGGGGT 1104161 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || |||||||||||| Sbjct 1104160 GGACCTGCTTCAGAACCTTGTAGATG 1104135 >seq16078 Length=220578 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | || || | || |||||||||| ||| || || || Sbjct 59824 GCTTGGCCAGCTCTCCGGGGAGGAGGAGTCTGACAGCGGTCTGGACCTCACGACTGGTGA 59765 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| |||| || || ||| ||||||| | ||||||| |||| | Sbjct 59764 TGGTGGACTTCTTGTTGTAGTGGGCAAGGCGGGAAGCCTCGGCGGCGATGCGCTCGAAGA 59705 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||| || |||||||| ||||| | | ||||||| || |||||| | Sbjct 59704 CATCGTTGACGAAGCTGTTCATGATGGACATGGCACGGCTGGAGATACCAGTGTCGGGAT 59645 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || |||||||||||| Sbjct 59644 GAACCTGCTTCAGAACCTTGTAGATG 59619 >seq14468 Length=67479 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | || || || || |||||||||||||| || ||| || Sbjct 48919 GCTTGGCCAGCTCTCCGGGGAGGAGGAGACGGACAGCGGTCTGGATCTCTCGGCTGCTGA 48978 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| || | | || |||||| | || | ||||||| |||| | Sbjct 48979 TGGTGGACTTCTTATTGTATTTGGCAAGACGGGAAGATTCACCGGCGATGCGCTCGAAGA 49038 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||| || |||||||| ||||| | |||| ||||||| || |||||||| Sbjct 49039 CATCGTTGACGAAGCTGTTCATGATGGACATGGCCTTGCTGGAGATACCAGTGTCGGGGT 49098 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||||| || || |||||||||||| Sbjct 49099 GGACCTGTTTCAGAACCTTGTAGATG 49124 >seq1315 Length=164145 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | || || || || |||||||||||||| || ||| || Sbjct 133538 GCTTGGCCAGCTCTCCGGGGAGGAGGAGACGGACAGCGGTCTGGATCTCTCGGCTGCTGA 133597 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || || || ||| ||||| | |||| || |||| | Sbjct 133598 TGGTGGCCTTCTTGTTGTAGCCTGCAAGGCGGGAAGCCTCACCGGCGATACGCTCGAAGA 133657 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||| || |||||||| ||||| | |||| ||||||| || |||||||| Sbjct 133658 CATCGTTGACGAAGCTGTTCATGATGGACATGGCCTTGCTGGAGATACCAGTGTCGGGGT 133717 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| || || ||||||||| Sbjct 133718 GAACTTGCTTCAGAACTTTGTAGATG 133743 >seq24366 Length=579982 Score = 96.9 bits (106), Expect = 4e-14 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1254413 CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1254472 |||||| |||| || |||||| ||||||| | ||||||| |||| | |||||||| Sbjct 54000 CTTGTTGTAGTGGGCAAGACGGGAAGCCTCGGCGGCGATGCGCTCGAAGACATCGTTGAC 53941 Query 1254473 AAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1254532 || |||||||| ||||| | | ||||||| || ||||||||| |||||||| Sbjct 53940 CAAGCTGTTCATGATGGACATGGCACGGCTGGAGATACCGGTGTCGGGGTGGACCTGCTT 53881 Query 1254533 GAGCACCTTGTAGATG 1254548 || |||||||||||| Sbjct 53880 CAGAACCTTGTAGATG 53865 >seq13845 Length=91670 Score = 86.0 bits (94), Expect = 8e-11 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 1852160 GCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 1852219 ||||||| || ||||| | ||| ||| || |||||||| || ||||| | ||||| | Sbjct 71196 GCAAAGGTGAAGATCTTTCTCTGATCGACGCCTCCAAACTGAGCATCGACCTTGAGGTAC 71255 Query 1852220 TGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCC 1852279 | ||| || || ||||| | ||||||||||| || ||||| |||| | || Sbjct 71256 TCCTCATCTAGCGCCTGGAGCCCCGGGTAGAGCAGACCACTGAGGAGGGGGTGATCGACC 71315 Query 1852280 ATCTTGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGC-CGGTGCGCACGTGCGCCGCG 1852336 ||||||||||| || |||||| || ||| ||||| ||||| |||| | | | Sbjct 71316 TGCTTGACCACCTCGGCTCCGGCCTTCTTGGCGTCGTGCTCGGTGACCACG---GAAGAG 71372 Query 1852337 AGTCGGTAGAGGTC 1852350 |||| ||||| ||| Sbjct 71373 AGTCTGTAGACGTC 71386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104521582806349