Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_023599.1 Length=38772 Score E Sequences producing significant alignments: (Bits) Value seq21096 547 2e-151 >seq21096 Length=1089 Score = 547 bits (606), Expect = 2e-151 Identities = 597/778 (77%), Gaps = 25/778 (3%) Strand=Plus/Plus Query 13907 AAAAGGTAAAAGAAGATTTAGCGGATTGGCTATATACAGAGCAACC-TGCTGAACTTGTT 13965 |||| |||||||||| |||| |||||||| ||| || ||||| ||| || ||| || Sbjct 325 AAAAACTAAAAGAAGAAATAGCAGATTGGCTCGTTACGGATCAACCGTGC-GAGCTTATT 383 Query 13966 TTTGATGATGAATTAGATAGGACGTATCTAGCATTAATTGATGGTTCTGTAGACCTGGAT 14025 |||||||||||| |||| | |||| | |||| | | |||| || |||| | || Sbjct 384 TTTGATGATGAAAAAGATCGTACGTTTTTAGCTGTCGTAGATGAAACTTTAGATTTAGAG 443 Query 14026 GAAATAGTTAATAGAGGTAAAGGGGTTATTACTTTTGTTTGTCCAATGCCATATAAATTA 14085 | ||||| || |||| |||| | | ||||| ||||||||||||||||||| ||| Sbjct 444 CAGTTAGTTGATCTAGGTGAAGGTACTTTAACTTTCATTTGTCCAATGCCATATAAGTTA 503 Query 14086 GGAAAACAAAATACTCATTCGTT--CTCTCAAAATGGTTCTACTGAAGTCACTGCTTCTT 14143 |||||| | | || ||| || | |||| | | || || || | | | || Sbjct 504 GGAAAAGAGCAAACG-----GTTGACTTTAAAAAAGATGTTAGTGG-GTTAGT--TGCTA 555 Query 14144 TTGTC---AATCAAGGGAATATAGAAGC--ACCTGCAATTATTGAAATCGA-AGCACAGA 14197 |||| ||| |||| | | | | | ||| | || ||||| || || | || || Sbjct 556 ATGTCCAAAATAAAGGAACTGTTCATTCTAACC--CTATCATTGAGATTGATATTAC-GA 612 Query 14198 AACCAAGTACATTTTTAGATGTGTGGTTTGGTGAG-TATCCATA--TAATCGAGATTACT 14254 |||||| ||| ||| |||| || ||||| || | | |||| || | |||||||||| | Sbjct 613 AACCAAATACTTTTCTAGACGTATGGTTCGGCGGGGTATCTTTAAGTGATCGAGATTATT 672 Query 14255 TCAGAATTGGTTATCCTTTAAAAACAGAGCAATTACCCGTTGAAAGAAATCAAAGACTTA 14314 | | || ||| || ||||||| | | || || || ||||| |||||| | | Sbjct 673 TTCGTATCGGTATGCCACTAAAAACTGTGGAAAAGCCTGTAGAAAGGAATCAACGTATAT 732 Query 14315 TATGGGACGAAATGGCTACCACCGTAGGATGGAGTAAAGTCAGTTCAATGGAAGATGGCA 14374 ||||||| ||||||||||| || || ||||||||||||||||| |||||||||||||| Sbjct 733 TATGGGATGAAATGGCTACTACGGTCGGATGGAGTAAAGTCAGCTCAATGGAAGATGGGG 792 Query 14375 ATCCAATTGGTGAAATGAAGTCAGATAAATACCAATTTTATTGTTCTGATTTTGGTACTA 14434 | || ||||||||||||| ||||||||||| |||||||||||||| |||||||| ||| Sbjct 793 AACCGGTTGGTGAAATGAAATCAGATAAATATCAATTTTATTGTTCCGATTTTGGAACTG 852 Query 14435 GTGCGGGGAAAGGGTGGCACGGTGCAGCTGTTAAAAAGAATATACCTGGGGGTCCAGTAC 14494 | |||| ||||| ||||||||||||||||||||||| | ||| ||||| || ||||| | Sbjct 853 GAACGGGAAAAGGATGGCACGGTGCAGCTGTTAAAAAAAGTATCCCTGGTGGCCCAGTGC 912 Query 14495 AAGATTTTATTATGCAAGCCCATGTTACATGTAAGAGTaaaaaaaTTAATGAAATGGGCC 14554 |||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| | Sbjct 913 AAGATTTTATTATGCAAGCCTATGTTACATGTAAGAGTAAAAAGATTAACGAAATGGGAC 972 Query 14555 GAGTTGAGATAGCGATACTGGATGAAAATAGCAAGGTTCTTTCCAAAATTGCCATGTCTG 14614 | ||||||||||||||||| |||||||| || || || ||||| ||||| || ||| ||| Sbjct 973 GGGTTGAGATAGCGATACTCGATGAAAACAGTAAAGTGCTTTCGAAAATAGCTATGACTG 1032 Query 14615 ATGTGTTTTGGCAAGCTGAACAAAACTTCGGGACGATGGTAATTGGATATGATAATAA 14672 |||||||||||||||||| |||||||||||| || |||||||| || ||||||||||| Sbjct 1033 ATGTGTTTTGGCAAGCTG-ACAAAACTTCGGAACAATGGTAATCGGTTATGATAATAA 1089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123901851060876