Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq26231 96.9 3e-15 >seq26231 Length=1354672 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||||| ||| || || || || |||||||| || | |||| || || Sbjct 554320 AACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGACCATCCTC 554261 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||| ||||||||| |||| ||||| |||||||||||||| |||||||||||||| Sbjct 554260 AAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTG 554201 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || |||| | || | | ||| | || || || || | || | ||||| Sbjct 554200 GATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTT 554141 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || | ||||| ||||| || |||||| Sbjct 554140 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 554110 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||| | || ||||| || || |||||||| || | |||| || || Sbjct 556600 AACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTC 556541 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 |||||| ||||||||| |||| ||||| |||||||||||||| |||||||||||||| Sbjct 556540 GAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTG 556481 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || |||| | || | | ||| | || || || || | || | ||||| Sbjct 556480 GATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTT 556421 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || | ||||| ||||| || |||||| Sbjct 556420 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 556390 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||| | || ||||| || || |||||||| || | |||| || || Sbjct 557377 AACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTC 557318 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 |||||| ||||||||| |||| ||||| |||||||||||||| |||||||||||||| Sbjct 557317 GAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTG 557258 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || |||| | || | | ||| | || || || || | || | ||||| Sbjct 557257 GATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTT 557198 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || | ||||| ||||| || |||||| Sbjct 557197 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 557167 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||||| ||| || || || || |||||||| || | |||| || || Sbjct 555460 AACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTC 555401 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||| || ||||| |||| |||||||||||||||||||| |||||||||||||| Sbjct 555400 AAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTGTCCTG 555341 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || |||| | || | | ||| | || || || || | || | ||||| Sbjct 555340 GATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTT 555281 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || | ||||| ||||| || |||||| Sbjct 555280 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 555250 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||||| ||| || || || || |||||||| || | |||| || || Sbjct 556372 AACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTC 556313 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||| || |||||| |||| ||||| |||||||||||||| |||||||||||||| Sbjct 556312 AAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTG 556253 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || |||| | || | | ||| | || || || || | || | ||||| Sbjct 556252 GATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTT 556193 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || | ||||| ||||| || |||||| Sbjct 556192 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 556162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||||| ||| || || || || |||||||| || | |||| || || Sbjct 553636 AACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTC 553577 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||| || ||||| |||| ||||| |||||||||||||| |||||||||||||| Sbjct 553576 AAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTG 553517 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || |||| | || | | ||| | || || || || | || | ||||| Sbjct 553516 GATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTT 553457 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || | ||||| ||||| || |||||| Sbjct 553456 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 553426 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||||| ||| || || || || |||||||| || | |||| || || Sbjct 554092 AACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTC 554033 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||| || ||||| |||| ||||| |||||||||||||| |||||||||||||| Sbjct 554032 AAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTG 553973 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || |||| | || | | ||| | || || || || | || | ||||| Sbjct 553972 GATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTT 553913 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || | ||||| ||||| || |||||| Sbjct 553912 GCCTGTGAGGGTTTTGACGAAGATCTGCATA 553882 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||||| ||| || || || || |||||||| || | |||| ||||| Sbjct 552268 AACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTC 552209 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||| || ||||| |||| ||||| |||||||||||||| |||||||||||||| Sbjct 552208 AAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTG 552149 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || |||| | || | | ||| | || || || || | || | ||||| Sbjct 552148 GATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTT 552089 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| | || || || || || ||||| Sbjct 552088 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 552059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 || || ||||| || |||||| |||| ||||| |||||||||||||| |||||||||||| Sbjct 552441 TCCTCAAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTG 552382 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || || || |||| | || | | ||| | ||||| || || | || | Sbjct 552381 TCCTGGATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGTTCGACCTCGAGTGTGATG 552322 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||||||| || | || || ||||| || |||||| Sbjct 552321 GTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCATA 552286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 || || ||||| || |||||| |||| ||||| |||||||||||||| |||||||||||| Sbjct 553809 TCCTCAAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTG 553750 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || || || |||| | || | | ||| | || || || || | || | Sbjct 553749 TCCTGGATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATG 553690 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||||||| || | ||||| ||||| || |||||| Sbjct 553689 GTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCATA 553654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488349211400400