Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_025424.1 Length=45648 Score E Sequences producing significant alignments: (Bits) Value seq21096 1169 0.0 >seq21096 Length=1089 Score = 1169 bits (1296), Expect = 0.0 Identities = 917/1092 (84%), Gaps = 12/1092 (1%) Strand=Plus/Minus Query 31846 TTGTTATCGTATCCAATAACCATCGTTCCAAAATTTTGTTCGGCTTGCCAATAGAGATCG 31905 || ||||| || || || ||||| ||||| || |||||| | ||||||||| | | ||| Sbjct 1089 TTATTATCATAACCGATTACCATTGTTCCGAAGTTTTGT-CAGCTTGCCAAAACACATCA 1031 Query 31906 TTCATGGCAATTTTTGAAAGAACTTTACTGTTTTCATCGAGTATCGCTATCTCAACTCGT 31965 |||| || ||||| ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1030 GTCATAGCTATTTTCGAAAGCACTTTACTGTTTTCATCGAGTATCGCTATCTCAACCCGT 971 Query 31966 CCCATTTCATTGATTTTCTTGCTCTTACAAGTAACGTAAGCTTGCATGATAAAATCTTCT 32025 |||||||| || || || || |||||||| ||||| || |||||||| |||||||||| Sbjct 970 CCCATTTCGTTAATCTTTTTACTCTTACATGTAACATAGGCTTGCATAATAAAATCTTGC 911 Query 32026 ACTGGGCCACCAGGGATACtttttttAACAGCTGCACCGTGCCATCCTTTTCCCGTTCCA 32085 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 910 ACTGGGCCACCAGGGATACTTTTTTTAACAGCTGCACCGTGCCATCCTTTTCCCGTTCCA 851 Query 32086 ------AAATCAGAACAATAAAATTGATATTTATCTGATTTCATTTCACCAACCGGTTCC 32139 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 850 GTTCCAAAATCGGAACAATAAAATTGATATTTATCTGATTTCATTTCACCAACCGGTTCC 791 Query 32140 CCATCTTCCATTGAGCTGACTTTACTCCATCCGACCGTAGTGGCCATTTCATCCCATATA 32199 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 790 CCATCTTCCATTGAGCTGACTTTACTCCATCCGACCGTAGTAGCCATTTCATCCCATAAT 731 Query 32200 AGCCTTTGATTCCTTTCTACAGGCTTTTCCACAGTTTTTAGCGGCATCCCAATACGAAAA 32259 | | |||||||||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct 730 ATACGTTGATTCCTTTCTACAGGCTTTTCCACAGTTTTTAGTGGCATACCGATACGAAAA 671 Query 32260 TAATCTCGATCACTTAAAGATACCCCACCAAACCATACATCTAAAAAAGTGTTCGGTTTC 32319 |||||||||||||||||||||||||| || |||||||| |||| |||||| || |||||| Sbjct 670 TAATCTCGATCACTTAAAGATACCCCGCCGAACCATACGTCTAGAAAAGTATTTGGTTTC 611 Query 32320 GTAATTTCAATCTCAATTATAGGATTAGAATGAACAGTACCTTTATTTTGAACATTTGCT 32379 ||||| ||||||||||| ||||| |||||||||||||| ||||||||||| ||||| || Sbjct 610 GTAATATCAATCTCAATGATAGGGTTAGAATGAACAGTTCCTTTATTTTGGACATTAGCA 551 Query 32380 ATTAACCCACGTCCATCCATTTCAAATTCTACCGTTTTAGTAGGTCCTAACTTATATGGC 32439 | |||||||| |||| ||| ||| || ||||||| |||||||||||||||| Sbjct 550 ACTAACCCACTAACATCTTTTTTAAAGTCAACCGTTTGCTCTTTTCCTAACTTATATGGC 491 Query 32440 ATTTCACAAACAAAAGT--AAGGACTCCTTCTCCTAAATTCACTAATTGCTGTGGGTCAA 32497 ||| ||||| ||||| ||| || |||| |||| || ||||| |||| | || | Sbjct 490 ATTGGACAAATGAAAGTTAAAGTAC--CTTCACCTAGATCAACTAACTGCTCTAAATCTA 433 Query 32498 ACGATTCATCAATAAGGGCCAAATACGTGCGATCTTTTTCATCATCAAAGATCAGTTCTT 32557 | | |||||| | | || ||| |||| |||||||||||||||||||| || || || Sbjct 432 AAGTTTCATCTACGACAGCTAAAAACGTACGATCTTTTTCATCATCAAAAATAAGCTCGC 373 Query 32558 GAGGTTGATCTGTAATAAGCCAATTAGCTATTTCTTCCTTTAACTTTTCAGCCTCTTCCA 32617 |||||||| |||| ||||||| ||||||||||| |||| |||||||| ||||| Sbjct 372 ACGGTTGATCCGTAACGAGCCAATCTGCTATTTCTTCTTTTAGTTTTTCAGCTTCTTCAG 313 Query 32618 TAGATTCATAAAATAATGCAACCGGTATAATTATTTTTCTCATTTTTGTTTGTGTTCTTA 32677 || ||||| |||| ||||| || | | || ||||||||||| |||||||| | || Sbjct 312 CTGAGTCATATAATAGTGCAATAGGAACTAAAATCTTTCTCATTTTAGTTTGTGTGCGTA 253 Query 32678 TCAAACGCCCACCTGGATAGTGAGGGACTTCAAGGAATGTACGTTCCAAAGGAGCCCATG 32737 || | || |||||||| || | ||||||||| || || | |||||||||||||||| Sbjct 252 GTAACCTACCTCCTGGATAATGCGAGACTTCAAGAAACATATGATCCAAAGGAGCCCATG 193 Query 32738 CAGGGCGTTTTTTACCCTGCAATGGGATTACATTTGAATTTCTTTTCCCGTTAAAACTAA 32797 ||||||| ||||||||||||| ||| |||||||||| ||| ||||||||||||||||||| Sbjct 192 CAGGGCGCTTTTTACCCTGCAGTGGAATTACATTTGGATTCCTTTTCCCGTTAAAACTAA 133 Query 32798 AGAAACTGATTCCAGTCATATCATCACCTACCTAAAATACTTTCAATCTTTCTTTCTCGC 32857 |||| || ||||| | ||||||||||||||||||||||||||| | |||||||||||||| Sbjct 132 AGAAGCTAATTCCCGCCATATCATCACCTACCTAAAATACTTTGAGTCTTTCTTTCTCGC 73 Query 32858 TTTCTTGAAACTTACTAACATCTGAGTAGATTT-CCTTTGCTATTTCTCTGCCGTTTAAA 32916 ||||||||| | | | ||||||||||| |||| |||| ||||||||||| ||||||||| Sbjct 72 GTTCTTGAAATTCATTGACATCTGAGTAAATTTCCCTTCGCTATTTCTCTTCCGTTTAAA 13 Query 32917 TTAACTTGCAAA 32928 |||| ||| ||| Sbjct 12 TTAATTTGTAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145896716757540