Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_026010.1 Length=50109 Score E Sequences producing significant alignments: (Bits) Value seq28821 901 0.0 >seq28821 Length=465073 Score = 901 bits (998), Expect = 0.0 Identities = 671/783 (86%), Gaps = 12/783 (2%) Strand=Plus/Plus Query 43473 CTCACAGTCCGCACTTTTCGATATGCGCTTTCATCTGGCGAACCAGGTCGCGCACGGTGC 43532 || ||||||| |||||||||||||||||||||||||||||||| | ||| ||| Sbjct 122550 CTTACAGTCCACACTTTTCGATATGCGCTTTCATCTGGCGAACGATCTCGTTTACG---- 122605 Query 43533 TTAC-AGCCACGTCACCTTTCT-----CAAGGTCATCAATATCAGGAACAAACGAGTCCA 43586 | || || || ||| | || | || | | | |||| |||||||| |||| Sbjct 122606 TCACGAGTCA--TCAATTCGCTATCAGCCAGTTTGCCCACATCAACCACAAACGAATCCA 122663 Query 43587 GGCAGTCGGACAGGCTAACTTTTTTCCGGCTACGGCGCTTCTTCACCGGAACCTCTTCAT 43646 |||| |||| |||||||||||||||||| || |||||||||||||| ||||||||||| | Sbjct 122664 GGCAATCGGCCAGGCTAACTTTTTTCCGACTGCGGCGCTTCTTCACGGGAACCTCTTCGT 122723 Query 43647 CAGTAACGGTAACGGTTATCATTGTGATTGCCGACTCATTCCGGCCCACCTTCACCTTTG 43706 | |||||| |||| ||||||||||||||||| | ||||||||||| ||||||||||||| Sbjct 122724 CGGTAACGATAACCGTTATCATTGTGATTGCAGCGTCATTCCGGCCTACCTTCACCTTTG 122783 Query 43707 CCATCTTGCCGTACTTGCAGAAGTGCCGGGTAATAATCGGAGTGATGAAAGCAGACTTAA 43766 ||| |||||| |||||||| ||||||| |||||| ||||||||||||||||| ||||| | Sbjct 122784 CCACCTTGCCATACTTGCAAAAGTGCCTGGTAATGATCGGAGTGATGAAAGCGGACTTGA 122843 Query 43767 ATCGCTTCTCCACCTCCTTCCCGTTCGAGGTCAACCATGTTGATACACCTCGCTCAATCT 43826 |||||||||| |||||| | |||| | || |||| | | | |||| | Sbjct 122844 ATCGCTTCTCTACCTCCCCCTGGTTCTGGTCCACCCATCCGGCAGCGGCAGATTCAAGAT 122903 Query 43827 CTTCCTCTGTAATATCCCGATCTCGGAAGTAAAATTTTACCGCCTCTCTCGCCATATCAT 43886 | || || | | ||| | || |||||||| ||| | ||||| |||||||||| Sbjct 122904 CGTCATCACTTACCTCCTGGTCACGGAAGTAGAATCGCGCGGCCTCGAGGGCCATATCAT 122963 Query 43887 CAGCCAAGAAAGAGAACTCGGTCATGCCTTTGTCGCGATACATTGCGTCGCAGGTTAGGC 43946 |||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||||| Sbjct 122964 CAGCCACGAAAGAGAACTCATTCATGCCTTTGTCGCGGTACATTGCATCGCAGGTTAGGC 123023 Query 43947 GAATCATGTCGGTGATTTTTAATTCCTGACTGGTATTGCTCATAATATATCCTCTTTGTC 44006 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 123024 GAATCATATCGGTGATTTTTAACTCCTGACTGGTATTGCTCATAATATATCCTCTTTGTC 123083 Query 44007 TATTCGCGTGTAAATGGTGTCATAATGTGTCAACAATTGCCATTGTGACATCTCGATGTA 44066 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 123084 TATTCGTGTGTAAATGGTGTCATAATGTGTCAACAATTGCCATTGTGACATCGCGATGTA 123143 Query 44067 GAGCTGTCAATGCCTGCGAGCCAATTTTAAGCCGTGTAACATTTGTCTAGCTGTCTATAG 44126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123144 GAGCTGTCAATGCCTGCGAGCCAATTTTAAGCCGTGTAACATTTGTCTAGCTGTCTATAG 123203 Query 44127 CCACTATAGAAATATATGGCTCTCaaaaaaaGTACTGTATATATAAACACTCAGATAGAA 44186 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 123204 CCACTATAGAAATATATGGCTCTCAAAAAAAGTACTGTATATATAAACATGCAGATAGAA 123263 Query 44187 ATATGCCAACAGTACGCTAGACAATGTAAGACAGCTATACACAACTATTACAATATAATT 44246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123264 ATATGCCAACAGTACGCTAGACAATGTAAGACAGCTATACACAACTATTACAATATAATT 123323 Query 44247 ATC 44249 ||| Sbjct 123324 ATC 123326 Score = 800 bits (886), Expect = 0.0 Identities = 522/572 (91%), Gaps = 2/572 (0%) Strand=Plus/Plus Query 44814 AATGAAGTTGATTTGGTCGCTATTCGACGGTTCCGGCCTGGCAGGTCATGAACTGGCAAA 44873 |||||| || |||||||| ||||||||||||||||| || || || |||||||||||||| Sbjct 123751 AATGAAATTAATTTGGTCACTATTCGACGGTTCCGGTCTTGCTGGCCATGAACTGGCAAA 123810 Query 44874 GCAAGGTCATAAGGTGATGTGCTTCAACTTTGACGGGGCAGATCACGGAGATTACGCAAA 44933 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 123811 GCAAGGTCATAAGGTGATGTGCTTCAACTTTGACGGAGCCGATCACGGAGATTACGCAAA 123870 Query 44934 GTACAATGCCCGGGTAGAGCATCCGAACATTGAGTATGTGAACGTCTTCATTGATGAGAA 44993 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123871 GTACAACGCCAGGGTAGAGCATCCGAACATTGAGTATGTGAACGTCTTCATTGATGAGAA 123930 Query 44994 GTTCGAACGTGATGCGATCGCTGGTGTGTATGGCAAACCTGATTTCATCATGGCTTTCCC 45053 ||||||||||||| ||||||| |||||||||| |||||| ||||| || ||||| |||| Sbjct 123931 GTTCGAACGTGATACGATCGCGGGTGTGTATGACAAACCGGATTTTATTATGGCCTTCCA 123990 Query 45054 ACCATGCACTGACCTAGCTGTTAGTGGTGCTCGCCATTTTGCCAGCAAGCGTGAACGTGA 45113 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 123991 TCCATGCACTGACCTTGCTGTTAGTGGTGCTCGCCATTTTGCCAGCAAGCGTGAACGTGA 124050 Query 45114 TCCGTTATTCCATGAGAAGGCTGTTGCCACCGCTCGGATTGCTGCTAATATTGGCGA-AG 45172 |||| ||||||| ||||| ||||| || || || || ||||| || || |||||||| || Sbjct 124051 TCCGCTATTCCAGGAGAAAGCTGTCGCTACTGCCCGTATTGCCGCGAACATTGGCGATAG 124110 Query 45173 CTATGGGCGTGACGTACATCATTGAGAATCCGGTTAGCGTCCTGTCATCTGCCTGGAGAA 45232 | ||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||| Sbjct 124111 C-ATGGGCGTGACTTACATAATTGAGAATCCGGTGAGCGTCCTGTCATCTGCATGGAGAA 124169 Query 45233 AACCAGATCACTCCTTTAATCCCTGGGAGTATGGCGGCTATCTTCCTGAGAATGACTCAC 45292 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | | Sbjct 124170 AACCAAATCACTCCTTCAATCCCTGGGAGTATGGCGGCTATCTTCCTGAGAATGACGCGC 124229 Query 45293 ATCCCTGGTTCCCGATGTATATTGCGCCGCGCGATGCTTACCCTAAGAAGACGTGTCTTT 45352 |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | Sbjct 124230 ATCCCTGGTTCCCGATGTATATCGCGCCGCGCGATGCTTACCCGAAGAAGACTTGTCTGT 124289 Query 45353 GGACCTCGGACGATTTTGTCATGCCGGAGAGA 45384 ||||||| ||||| || || |||||||||||| Sbjct 124290 GGACCTCTGACGACTTCGTTATGCCGGAGAGA 124321 Score = 473 bits (524), Expect = 4e-129 Identities = 303/329 (92%), Gaps = 1/329 (0%) Strand=Plus/Plus Query 44338 GTCACAAGTGCGATTCTAGACAAATATTACAGTCGTGACAAGTTAAAGTGTAATCGATAG 44397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123413 GTCACAAGTGCGATTCTAGACAAATATTACAGTCGTGACAAGTTAAAGTGTAATCGATAG 123472 Query 44398 CACTTTTTGCTAAAAATGGAGATGAATGCCAGGCGAACCGGGTAACACCAATTCCTCCCT 44457 ||||||||||||||||||||||||| | |||||||||| ||| ||||| || |||||||| Sbjct 123473 CACTTTTTGCTAAAAATGGAGATGACTACCAGGCGAACAGGGCAACACTAAATCCTCCCT 123532 Query 44458 CTCACAATCATTGCATTCTCAGCAACAAATCAACCAACTGTTGCACACCATGCAATAATC 44517 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 123533 CTCACAATCATTGCAATCTCAGCAACAAATCAACCAACTGTTGCACACCATGCAATAATC 123592 Query 44518 ACGTTTCATCATTCGTAATCAATAACAATCAAGATTATTCCACCTATTCCAGTATTGATT 44577 ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 123593 ACGTTTCATCATTCGCAATCAATAACAATCAAAATTATTCCACCTATTCCAGTATTGATG 123652 Query 44578 GAATAATGAGCAATTATTGGAATAGCATTTTTTGCTAACGACTTAGCAAGGCCGATTGGG 44637 ||||||||||||||||||||||||||| ||||||||||||||| | ||| || ||| Sbjct 123653 GAATAATGAGCAATTATTGGAATAGCA-TTTTTGCTAACGACTCGACCAGGTTGACAGGG 123711 Query 44638 TATGATTCATCACATCAACCAATCAGGAG 44666 ||| ||| |||||||||||||| || Sbjct 123712 TATAGTTCGGGCCATCAACCAATCAGAAG 123740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160166509641894