Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq27120 89.7 2e-14 seq26406 89.7 2e-14 seq26003 87.8 6e-14 seq12813 87.8 6e-14 seq6114 87.8 6e-14 seq5413 87.8 6e-14 seq31631 84.2 7e-13 seq7780 84.2 7e-13 seq2282 80.6 8e-12 >seq27120 Length=1230682 Score = 89.7 bits (98), Expect = 2e-14 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1211449 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 1211505 >seq26406 Length=9631 Score = 89.7 bits (98), Expect = 2e-14 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3580 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 3524 >seq26003 Length=12948 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 6283 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 6228 >seq12813 Length=134821 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 99059 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 99004 >seq6114 Length=141614 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 74457 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 74512 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 75651 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 75596 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 76234 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 76179 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 78183 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 78238 >seq5413 Length=227306 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 136906 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 136851 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 141931 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 141986 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 151945 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 151890 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 152862 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 152807 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 156314 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 156259 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 165482 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 165537 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 166137 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 166192 Score = 87.8 bits (96), Expect = 6e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 166476 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 166531 Score = 84.2 bits (92), Expect = 7e-13 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| ||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 154496 GCCGAAATAGCTGAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 154441 Score = 78.8 bits (86), Expect = 3e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| ||| |||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 150965 GCAGAAATAGTTCAGATGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 150910 >seq31631 Length=282218 Score = 84.2 bits (92), Expect = 7e-13 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 || ||| |||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 109304 GCCGAAATAGCTCAGTTGGGAGAACGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 109249 >seq7780 Length=1142098 Score = 84.2 bits (92), Expect = 7e-13 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 |||||||||||||||||| ||||||||||||||| |||||||||||||||| || Sbjct 316866 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCAAACC 316813 >seq2282 Length=171271 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/56 (93%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 |||||| |||||||||||||||| | ||||||||||||||| |||||||||||||| Sbjct 3838 GCTGAAATAGCTCAGTTGGGAGATCGTTAGACTGAAGATCT-AAGGTCCCTGGTTC 3784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15844070495565