Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq26231 86.0 6e-12 >seq26231 Length=1354672 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||||||||| | ||||| || || | ||||| || | ||||| |||| ||||| || Sbjct 552055 CAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACACTCGAGGTCGA-GC 552113 Query 25231 CAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 ||| || | |||||| | ||||| || || || ||||| || || || |||| Sbjct 552114 CAAGTGACTCCATCGAGAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCG 552173 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 ||||||| | ||||| | || ||||| ||||| ||||||| | | | || || | Sbjct 552174 ATCAGCAGCGTCTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGCACTCTCTCAGACT 552233 Query 25350 ACAATATTCAAAAAGAATCCACCATTCAT 25378 |||| || || || || ||||| ||||| Sbjct 552234 ACAACATCCAGAAGGAGTCCACACTTCAT 552262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444916935299040