Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2070 123 3e-23 seq31154 116 4e-21 seq27420 113 5e-20 >seq2070 Length=221348 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146910 CTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCAC 146969 |||| |||||| || || | ||| ||||| || || ||||| || |||| ||||||||| Sbjct 201429 CTGATCTTTCAGTGGTTCGATGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCAC 201488 Query 146970 AAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCT 147029 ||| || || || || ||||| ||||| || || | |||||| ||||| || ||||| || Sbjct 201489 AAAATCTCCTGGTTTGAGGCCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACT 201548 Query 147030 GGCTATGTTGAAGGGGACCCCCAGGCCC 147057 ||| |||||||| || || ||||| ||| Sbjct 201549 GGCGATGTTGAAAGGCACTCCCAGACCC 201576 >seq31154 Length=245217 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146916 TTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTC 146975 ||| || || || | ||| ||||| || || ||||| || |||| |||||||||||| || Sbjct 181061 TTTGAGTGGTTCGATGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATC 181002 Query 146976 CCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTAT 147035 || || || || || ||||| || || | |||||| ||||| || ||||| ||||| || Sbjct 181001 TCCTGGTTTGAGACCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGAT 180942 Query 147036 GTTGAAGGGGACCCCCAGGCCC 147057 ||||||||| || ||||| ||| Sbjct 180941 GTTGAAGGGCACTCCCAGACCC 180920 >seq27420 Length=320187 Score = 113 bits (124), Expect = 5e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 ||| ||||| || || ||||| || |||| |||||||||||| || || || || ||||| Sbjct 118983 GTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATCTCCTGGTTTGAGGCC 119042 Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 ||||| || || | |||||| ||||| || ||||| ||||| |||||||| || || || Sbjct 119043 AGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGATGTTGAAAGGCACTCC 119102 Query 147051 CAGGCCC 147057 ||| ||| Sbjct 119103 CAGACCC 119109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255356040800