Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq26965 120 4e-22 seq29598 102 1e-16 seq26121 102 1e-16 >seq26965 Length=571932 Score = 120 bits (132), Expect = 4e-22 Identities = 119/152 (78%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 ||||| |||| |||||| || |||||||| ||||| || |||||||| ||||| ||||| Sbjct 62585 CGCTTCTTGAACCAAAAAATAGCAGCAAAGGATCCTGAGAAGAAGATTCCTTCCACTGCA 62644 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA--TTATG-TATCCACTTCTGTGCC 39808 ||||||||||| | |||||| || | | | ||| | ||| |||||||||| ||| Sbjct 62645 GCAAATGCAACCAATCTCTCAGCGAAGGTGCTCTCATCTGATGCTATCCACTTCAAAGCC 62704 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCATTGT 39840 || || ||||||||||| ||| | |||| ||| Sbjct 62705 CAGTCTGCTTTCTTCTTCACAAATGGCACTGT 62736 >seq29598 Length=358761 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 69298 ACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTC 69357 ||||||| || | | | || | || ||||||||||| |||||||| || ||||| || Sbjct 199661 ACCTCATCAGCACTGGAGTACTCTACGATCTCTGTACACAGATTACTGCACTTGATGGTG 199720 Query 69358 CCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTA 69417 |||| ||||| || |||||||| |||||||| ||||||||| | || | || ||| Sbjct 199721 CCCAAGTTTTGTTGGTTACTCTTCTTGTTACAATGGTCCTTGTAGACCATGTAAGGGGTA 199780 Query 69418 CCAGTTTCAATCTGAGATTCGATAAT 69443 ||||| || |||| || ||||| || Sbjct 199781 CCAGTCTCTGTCTGGGACTCGATGAT 199806 >seq26121 Length=543453 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| || || | ||| || || || || || || ||||| || || ||||| | Sbjct 56961 CCTCGTCTCTGCTGATGAGTTCATTGGAGAAGGTAAGACCGGGCATGAGTCCTCGCTTCT 57020 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| || || || || ||||| || || ||||||||||| || ||||||||||| | Sbjct 57021 TGAGCCAGAAGATTGCGGCGAAAGAGCCTGAGAAGAAGATGCCCTCCACTGCTGCAAAGG 57080 Query 39759 CAACAA 39764 | |||| Sbjct 57081 CGACAA 57086 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| || ||||| || |||||||||||||| | ||||| || || || || || ||||| Sbjct 55672 CATGACGCCCATCTTCTGGTATTCACCAACCCTCTTCTCAAAGAAGTTTGTCTTTCCTTC 55731 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||||| || ||||||||||| ||||| || || Sbjct 55732 CAATGAGATGTTTTCCATGAAGTCAAATGGGTT 55764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686634920875080