Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_027383.1 Length=44613 Score E Sequences producing significant alignments: (Bits) Value seq28821 98.7 3e-16 >seq28821 Length=465073 Score = 98.7 bits (108), Expect = 3e-16 Identities = 242/357 (68%), Gaps = 10/357 (3%) Strand=Plus/Plus Query 2917 CCGGATATCATCTATG-CATTCCCGCCGTGTACGGATCTGGCGGTGAGTGGCGC--GCCA 2973 |||||| | || |||| | |||| || || || || || || || ||||| || |||| Sbjct 123968 CCGGATTTTAT-TATGGCCTTCCATCCATGCACTGACCTTGCTGTTAGTGGTGCTCGCCA 124026 Query 2974 GCTTTCCCGCGCAAACGCGCCCGCGACCCTGCCTTCCAGCTTAAGGCGGTGCGC-ACCGC 3032 || || || || || | || || || |||||| || || || ||| || || Sbjct 124027 TTTTGCCAGC--AAGCGTGAACGTGATCCGCTATTCCAGGAGAAAGCTGT-CGCTACTGC 124083 Query 3033 GAAGATTGCAGCTTACCTGGGTGATTTCTTCGAAGTGCCATATATGATTGAGAATCCGCG 3092 ||||| || || | || ||| | | | ||| | || || |||||||||||| Sbjct 124084 CCGTATTGCCGCGAACATTGGCGATAGCATGGGCGTGACTTACATAATTGAGAATCCGGT 124143 Query 3093 CAGCGTGCTTTCTACCCAATGGCGTAAGCCAGACCACTCGTTTGACCCGTGGGAGTATGG 3152 ||||| || || | |||| | || ||| | ||||| || | || ||||||||||| Sbjct 124144 GAGCGTCCTGTCATCTGCATGGAGAAAACCAAATCACTCCTTCAATCCCTGGGAGTATGG 124203 Query 3153 CGGCTATTTGCCGGAGGATGACGTGCACCCGCTCTTCCCGGAATACATCAACGCC-CGCG 3211 ||||||| | || ||| |||||| ||| || |||||| || ||| |||| |||| Sbjct 124204 CGGCTATCTTCCTGAGAATGACGCGCATCCCTGGTTCCCGATGTATATC-GCGCCGCGCG 124262 Query 3212 ATTCATATCCGAAGCTGACCTGCTTATGGACCGGCAACGGCTTCCGTATGCCAGAGA 3268 || | || |||||| ||| || | |||||| ||| |||| |||||| |||| Sbjct 124263 ATGCTTACCCGAAGAAGACTTGTCTGTGGACCTCTGACGACTTCGTTATGCCGGAGA 124319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142585971266550