Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq26121 91.5 1e-13 >seq26121 Length=543453 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| | ||||| ||||| || |||||||| || || |||||||| || |||||||| ||| Sbjct 55770 GTAGAGAACCCATTTGACTTCATGGAAAACATCTCATTGGAAGGAAAGACAAACTTCTTT 55711 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGA 44588 || || | ||||| ||||| ||| ||||||||||||| Sbjct 55710 GAGAAGAGGGTTGGTGAATACCAGAAGATGGGCGTCATGA 55671 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || || ||||||| | ||||| |||||||| || || ||||| || || Sbjct 58096 CAAGAAGTCCAGGTAGCAGAAGCCAGGTGTTTCTATGGGTTCCAGATCGCCATTGAGAAC 58037 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || || || |||||||| || || || ||||| |||||||||||| Sbjct 58036 ATCCACTCAGAAATGTATTCACTACTCATCGATACATACATCAAAGAT 57989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397301491091485