Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq29598 87.8 2e-12 seq26121 84.2 3e-11 >seq29598 Length=358761 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||||| || |||||||| | || | ||| || || ||||| || | |||||| Sbjct 199678 GTACTCTACGATCTCTGTACACAGATTACTGCACTTGATGGTGCCCAAGTTTTGTTGGTT 199737 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 |||||||||||| || |||||||||| |||||| || || || ||||| ||||| || Sbjct 199738 ACTCTTCTTGTTACAATGGTCCTTGTAGACCATGTAAGGGGTACCAGTCTCTGTCTGGGA 199797 Query 111400 TTTGAGAATAGCCTTCCA 111417 | || || || | ||| Sbjct 199798 CTCGATGATGGCATACCA 199815 >seq26121 Length=543453 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 |||| |||| | || |||||||| |||||| ||||| |||||||| || ||||||| Sbjct 56961 CCTCGTCTCTGCTGATGAGTTCATTGGAGAAGGTAAGACCGGGCATGAGTCCTCGCTTCT 57020 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 | | ||| | || ||| ||| || || ||||||||||| |||||||| Sbjct 57021 TGAGCCAGAAGATTGCGGCGAAAGAGCCTGAGAAGAAGATGCCCTCCAC 57069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627781595791200