Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq26121 98.7 1e-15 seq29598 84.2 3e-11 >seq26121 Length=543453 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||||||||| |||||| ||||| |||||||| || ||||||| Sbjct 56961 CCTCGTCTCTGCTGATGAGTTCATTGGAGAAGGTAAGACCGGGCATGAGTCCTCGCTTCT 57020 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 | | |||||| || || || ||||| ||||||||||| |||||||| Sbjct 57021 TGAGCCAGAAGATTGCGGCGAAAGAGCCTGAGAAGAAGATGCCCTCCAC 57069 >seq29598 Length=358761 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 118088 CTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGAC 118147 |||||| || | ||||| ||||| || | | || || | |||||| | |||||| Sbjct 197262 CTTCATTTCATCAGACCACAGACCCATATCAGTCAGGTCTCTTAGGAGATGATGATTGAC 197321 Query 118148 AACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAA 118207 || ||||| || | || || | | ||||| || ||||||| ||||| | Sbjct 197322 CACCTGGAACTCTCCTGACAGCACACGGCGCGTGTAGATGTTACTCGTGTAAGGCTCGAT 197381 Query 118208 GCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAG 118267 | |||||||||||||| ||| || || ||||| || || |||||||| || | ||| || Sbjct 197382 GGCCTCATTGTTACCCAGGATCTGAGCGGTGGATGCGGTCGGCATGGGAGCAAGGAGGAG 197441 Query 118268 GCTGTTACGGA 118278 ||||| |||| Sbjct 197442 ACTGTTTCGGA 197452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618188622155320