Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq29598 96.9 4e-15 seq26121 91.5 2e-13 seq26965 84.2 3e-11 >seq29598 Length=358761 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 105459 ACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 ||||||||| | | ||||||| |||| || | || | || |||||||||||| Sbjct 197494 ACGACTGGGCATCCCTCAAGGCCGACATCGCCAAGCACGGCGTCCGAAACAGTCTCCTCC 197435 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 | ||||| ||||| || || |||||||| || ||| ||||||| ||||| | | || | Sbjct 197434 TTGCTCCCATGCCGACCGCATCCACCGCTCAGATCCTGGGTAACAATGAGGCCATCGAGC 197375 Query 105579 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACA 105638 | ||||||| |||||||| | | | || | |||||||| | | ||||| Sbjct 197374 CTTACACGAGTAACATCTACACGCGCCGTGTGCTGTCAGGAGAGTTCCAGGTGGTCAATC 197315 Query 105639 AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | |||||| | ||||| | || || ||||| ||||| | || |||||| Sbjct 197314 ATCATCTCCTAAGAGACCTGACTGATATGGGTCTGTGGTCTGATGAAATGAAG 197262 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | || || || |||| || || ||||||||||| || |||||| | ||||| | Sbjct 199817 TGTGGTATGCCATCATCGAGTCCCAGACAGAGACTGGTACCCCTTACATGGTCTACAAGG 199758 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 || |||||| | |||||||| ||| | || ||||| |||||| | ||||| | Sbjct 199757 ACCATTGTAACAAGAAGAGTAACCAACAAAACTTGGGCACCATCAAGTGCAGTAATCTGT 199698 Query 105006 GTACAGAAATC 105016 ||||||| ||| Sbjct 199697 GTACAGAGATC 199687 >seq26121 Length=543453 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 94814 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 94873 |||| ||||| || ||||| ||||||||||| || || ||| ||| || | |||| Sbjct 57083 TCGCCTTTGCAGCAGTGGAGGGCATCTTCTTCTCAGGCTCTTTCGCCGCAATCTTCTGGC 57024 Query 94874 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 94933 ||||||||||||| |||||||| ||||| ||||||||| || || ||| | |||| Sbjct 57023 TCAAGAAGCGAGGACTCATGCCCGGTCTTACCTTCTCCAATGAACTCATCAGCAGAGACG 56964 Query 94934 AGG 94936 ||| Sbjct 56963 AGG 56961 >seq26965 Length=571932 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 ||||| || | | | | |||||||| || |||||| |||||||| | | || | | Sbjct 62736 ACAGTGCCATTTGTGAAGAAGAAAGCAGACTGGGCTTTGAAGTGGATAGCATCAGATGAG 62677 Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851 | |||| |||||| || | | |||||||| || || || ||||||||||| || Sbjct 62676 AGCACCTTCGCTGAGAGATTGGTTGCATTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGA 62617 Query 94852 TCCTTCTGC-GCTATTTATTGGCTCAAGAAGCG 94883 ||||| ||| ||||||| |||| |||||||||| Sbjct 62616 TCCTT-TGCTGCTATTTTTTGGTTCAAGAAGCG 62585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583028246628280