Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq29598 100 3e-16 seq26121 87.8 2e-12 seq26965 82.4 8e-11 >seq29598 Length=358761 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 20343 CCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGC 20402 ||||||||| || ||| | ||||| | || ||| | ||| | || ||||||| Sbjct 197482 CCCTCAAGGCCGACATCGCCAAGCACGGCGTCCGAAACAGTCTCCTCCTTGCTCCCATGC 197423 Query 20403 CGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCA 20462 ||||||| || ||||| |||||| |||| ||||| ||||| ||||||| ||||||| | Sbjct 197422 CGACCGCATCCACCGCTCAGATCCTGGGTAACAATGAGGCCATCGAGCCTTACACGAGTA 197363 Query 20463 ACATCTACTTGCGTCGTACACTGGCCGGTGAGTTC 20497 |||||||| ||| ||| ||| | || |||||| Sbjct 197362 ACATCTACACGCGCCGTGTGCTGTCAGGAGAGTTC 197328 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| || | ||| |||||| ||||||||| ||||||| ||||||| ||||| Sbjct 197328 GAACTCTCCTGACAGCACACGGCGCGTGTAGATGTTACTCGTGTAAGGCTCGATGGCCTC 197387 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 ||||| |||| |||||| ||||| || |||||||||||||| || | || ||| || Sbjct 197388 ATTGTTACCCAGGATCTGAGCGGTGGATGCGGTCGGCATGGGAGCAAGGAGGAGACTGTT 197447 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG 78660 || | || ||| | ||| ||| |||| ||| Sbjct 197448 TCGGACGCCGTGCTTGGCGATGTCGGCCTTGAGG 197481 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCT- 19551 ||||| |||||||| ||||| ||||| || ||| || | || ||||| || ||| Sbjct 200705 TTCGCAATCTACCTGGAGCCGTGGCATGCAGACATCTTTGACTTCCTAGA-CTGTAAGAA 200647 Query 19552 GAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGG 19610 |||||| ||| | |||||| | | ||| ||||| ||| |||| || ||||| || | Sbjct 200646 GAACCACGGTAAGGAGGAGCAGAGGGCTCGGGACCTGTTCTACGGTCTC-TGGATCCCAG 200588 Query 19611 ACCTATTCATGGAGAAGGTTGAGAAG--GACGAAGAATGGCACCTGATGTGCCCGCACGA 19668 | |||||||| | |||| || |||| || | ||| ||| |||||||||||| || || Sbjct 200587 ATTTATTCATGAA-AAGGGTG-GAAGCTGATGGAGACTGGACCCTGATGTGCCCTCATGA 200530 Query 19669 ATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704 | |||| || |||| || || | || |||| ||| Sbjct 200529 AAGCCCAGGGCTACATGAAGTATGGGGAGAGGAGTT 200494 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/217 (72%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 79305 CTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTC 79364 ||||||||| | || | || || |||| || || |||||||||||| |||||| | Sbjct 200501 CTCCCCATA--CTTCATGTAGCCCTGGGCTTTCATGAGGGCACATCAGGGTCCAGTCTCC 200558 Query 79365 GTC--CTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTC 79421 || |||| || |||| || ||||| | || |||||||| || |||| ||| ||||| Sbjct 200559 ATCAGCTTC-CACCCTTTTC-ATGAATAAATCTGGGATCCAGAGA-CCGTAGAACAGGTC 200615 Query 79422 GCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACG-CAGCTCGAGAAAGTCCATGATGT 79480 || | | |||||| | || |||||| ||| || || ||||| | ||||| Sbjct 200616 CCGAGCCCTCTGCTCCTCCTTACCGTGGTTCTTCTTACAG-TCTAGGAAGTCAAAGATGT 200674 Query 79481 CGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACC 79517 | || |||||||||||||| ||||| ||||| | ||| Sbjct 200675 CTGCATGCCACGGCTCCAGGTAGATTGCGAAAGCACC 200711 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| ||||| |||| |||| ||||||||||||| | ||| | ||||| || Sbjct 199681 CTCTACGATCTCTGTACACAGATTACTGCACTTGATGGTGCCCAAGTTTTGTTGGTTACT 199740 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||||| |||||| |||||||||| |||||| || || || ||||| Sbjct 199741 CTTCTTGTTACAATGGTCCTTGTAGACCATGTAAGGGGTACCAGTCTC 199788 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 || || ||||| || | ||||| |||||||||||||| || ||||| ||||| || ||| Sbjct 201641 AGTTGCTTCCTCCTGACGATGAAAGATGACAGCATTGACGGTATCTATGAGACACTAAAG 201582 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 | ||||| | |||||||||| | | || |||||||| Sbjct 201581 AATTGCGCCCTCATCTCCAAGACGGCTGGAGGTATCGG 201544 >seq26121 Length=543453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || |||||| ||||| || ||||||||||| ||||| ||| || || ||||||||| Sbjct 57081 GCCTTTGCAGCAGTGGAGGGCATCTTCTTCTCAGGCTCTTTCGCCGCAATCTTCTGGCTC 57022 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| || |||||||| || || | |||||||| || || || | | |||||| Sbjct 57021 AAGAAGCGAGGACTCATGCCCGGTCTTACCTTCTCCAATGAACTCATCAGCAGAGACGAG 56962 Query 60111 G 60111 | Sbjct 56961 G 56961 >seq26965 Length=571932 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60346 ACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGC 60405 ||||||| |||| ||||||| ||||||| ||||||| ||| |||||||||||||||||| Sbjct 60720 ACCCTTTTGACTTCATGGAGAACATCTCGCTGGAAGGAAAGTCCAACTTCTTTGAGAAGC 60661 Query 60406 GGGTCGGGGATTA 60418 | || || || || Sbjct 60660 GAGTGGGAGAGTA 60648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548306096305680