Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq22110 109 6e-19 seq26121 89.7 6e-13 >seq22110 Length=945660 Score = 109 bits (120), Expect = 6e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 117303 GAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATT 117362 ||||||| |||||||||| |||||||||||||||||| ||| ||| | ||||| || | Sbjct 336035 GAGTGAAGATGTAACGAGCGCTTGCAGCATCCTTGCCCCCATGAAGCCTGGTACCAAACT 335976 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | ||| | || | || ||| |||||||||||| || |||||||| || |||| ||||| Sbjct 335975 GACCAATGGGTTGCAGGAGATTCAGGTTGTTGCTACCAACAAAGTTCTGGGCCAGGTTGA 335916 >seq26121 Length=543453 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||||||| || | |||||| || || | ||| || ||||| ||||| |||||||| Sbjct 56963 TCGTCTCTGCTGATGAGTTCATTGGAGAAGGTAAGACCGGGCATGAGTCCTCGCTTCTTG 57022 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| ||||| || ||| || || |||||||||||| || || ||||||||| Sbjct 57023 AGCCAGAAGATTGCGGCGAAAGAGCCTGAGAAGAAGATGCCCTCCACTGCTGCAAAGGCG 57082 Query 74892 ACAA 74895 |||| Sbjct 57083 ACAA 57086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546997818140600