Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq26110 178 5e-40 >seq26110 Length=72620 Score = 178 bits (196), Expect = 5e-40 Identities = 543/827 (66%), Gaps = 27/827 (3%) Strand=Plus/Plus Query 44612 ACGTAGACCACCGCAGCCATCTTCATGACGTTGAAGTCCATGCCGATGTGCAGAGCCTCT 44671 || || ||||| |||||||| || | |||||||||||||| || | || ||| | || Sbjct 49547 ACATATACCACAGCAGCCATTTTAGTTACGTTGAAGTCCATTCCCACATGAAGAACATCA 49606 Query 44672 CCCGGCTTGATTCGCTCGCTTG-TGCTGTTCTCGCTAC-GGCTAAAGGTGTAGTAGACAA 44729 ||| | | || |||| ||| || || || || |||| ||||||| | Sbjct 49607 TTAACCTTAACTGTTTCACTTGATGCACTTA--GCAACCGGTTAAAACAATAGTAGATGA 49664 Query 44730 CCCCGGAGTAGTTCTCGAAGCTGGCTTCATACTCCTGGCGGAACGTGCGCGGATCCATCT 44789 | || ||| |||| ||||| ||||||| ||||| | || || |||||||| | Sbjct 49665 CACCTTGATAGCTCTCAAAGCTTGCTTCATGTTCCTGACTAAATGTCTTAGGATCCATTT 49724 Query 44790 TCCTGCGGGCCGC-----TTCCAACTCCTCAGCCGGGACGTTGCCACCCTGCAGCGATGT 44844 | | || | || ||| ||||| | | || ||||| || | || || Sbjct 49725 TGCGTTTAGCAACAATGATTTCAAA--CTCAG---GAATATTTCCACCTTGTAATGAAGT 49779 Query 44845 ATAGAGCCAGCTCTTGTGGTCTGGCTCGCCGCCGACCTGACCGTCGCGGTAGGTGTCGAA 44904 || |||| || |||||| || || |||||| || | | ||||| | Sbjct 49780 GTAAGAAAAGCTTTTACAGTCTGGTTCATGCCCTGGCTGACCATCCATGAATGTGTCATA 49839 Query 44905 GCAGTGGTTGAAGCCTTTTGGGGTGCCAATTCGCAGCGCGTGGCCGCC--CTTGCACTT- 44961 || ||||| |||||||| || || ||||||| | | ||||| || || || || Sbjct 49840 ACAATGGTTAAAGCCTTTAGGCGTACCAATTCTTAAAACATGGCCACCGACTCGCTGTTC 49899 Query 44962 GCCGATACCTGGCACGACGTACTCGCACGTAGACAGCATCGGGCGCAGCACTTCTTCCCA 45021 |||| | ||| | |||| || ||||| ||||||||||| |||||||||||||| Sbjct 49900 GCCGTT------CACCATATACTTACAGGTAGAAAGCATCGGGCGAAGCACTTCTTCCCA 49953 Query 45022 GGCCGCCCATTTGCAGTCGGCCCATTCATCCACAAGAACGAAGAACAGGCCAGAGCCGCG 45081 || |||||||| ||||||||||||||||| | || | ||| || | ||||| || || Sbjct 49954 TGCAGCCCATTTACAGTCGGCCCATTCATCAATAATTAAGAAAAATAAACCAGATCCACG 50013 Query 45082 CAGGTCGTCGTAGTTCTCCAGGCCCAC-ACAGCGAATCAGGTGACCACTCTTGAGCGTGA 45140 ||||| || ||||| || || || || ||| || || | || ||||| | | || | Sbjct 50014 AAGGTCATCATAGTTATCTAGACCAACGACA-CGGATAATATGGCCACTTCTTAAAGTAA 50072 Query 45141 -TCAGCATGTCCGACTCGTTCGGCTTGCACTCCCGCCACTCTCGCGGGATGGCTTGCTTT 45199 | | ||| || | || || ||||| | | ||||| | || || ||||| ||| Sbjct 50073 TTGAACAT-TCAGTTTCATTAGGCTTACCAGCTCGCCAAGATGCTGGAATAGCTTGTTTT 50131 Query 45200 AGCCGGCGCCAGAACACTCGACGAGCCTGCTTCTGCGTCGGAGCCGCGTACCAGATCTCG 45259 || || |||||| || || || ||||| || || || || |||||||| || Sbjct 50132 AGTCGCTTCCAGAAAACCCGTTTTGCTTGCTTAAAGGTAGGCGCTGCATACCAGATTTCA 50191 Query 45260 TCCTCGATGCTCACGCCCCACTCAGCAGCCAACCTGGCCGCGCGGCGCATCTCTGCCTTG 45319 ||||| | || ||| | ||| || | || || || | ||||| || || ||| Sbjct 50192 TCCTCTACCGAAACATTCCATTTAGCCGCTAGTCTTGCGGCTCTTCGCATTTCCGCTTTG 50251 Query 45320 CCGAGGAACGTCTTGCCAAACCGCCGACCACAGACCGCATCCCTGAAGCGGGCATTACGC 45379 | | ||| || || || || || || ||||| || ||||| | || ||||| | Sbjct 50252 GCCAAGAATGTTTTACCGAAACGTCGGCCACAAACAGCATCACGTAATCGGGCTTCTTTT 50311 Query 45380 TGGAAGCCCCAGACGTAGATGTTTGCCTGCTTCGGCGTCAGTTGAAC 45426 || ||||||| | || || || || ||||| ||||| | |||||| Sbjct 50312 TGCCAGCCCCACAAATAAATATTGGCTTGCTTAGGCGTTAATTGAAC 50358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194745406992234