Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_028748.2 Length=51366 Score E Sequences producing significant alignments: (Bits) Value seq21096 1159 0.0 >seq21096 Length=1089 Score = 1159 bits (1284), Expect = 0.0 Identities = 915/1092 (84%), Gaps = 6/1092 (1%) Strand=Plus/Plus Query 12895 TTTGCAAGTTAATTTAAACGGACGAGAAATAGC-AAGGGAAATCTACTCCGATGTTAGCA 12953 ||| ||| |||||||||||||| |||||||||| ||||||||| ||||| ||||| | Sbjct 1 TTTACAAATTAATTTAAACGGAAGAGAAATAGCGAAGGGAAATTTACTCAGATGTCAATG 60 Query 12954 AGTTTCAAGAAAGCGAGAAAGAAAGATTGAAAGTATTTTAGGTAGGTGATGATATGACTG 13013 | ||||||||| |||||||||||||| | ||||||||||||||||||||||||||| | | Sbjct 61 AATTTCAAGAACGCGAGAAAGAAAGACTCAAAGTATTTTAGGTAGGTGATGATATGGCGG 120 Query 13014 GAATTAGTTTCTTTAGTTTTAACGGGAAAAGGAATCCAAATGTAATTCCATTGCAGGGTA 13073 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 GAATTAGCTTCTTTAGTTTTAACGGGAAAAGGAATCCAAATGTAATTCCACTGCAGGGTA 180 Query 13074 AAAAACGCCCTGCATGGGCTCCTTTGGAACGTACGTTTTTGGAAGTCCCTCACTATCCAG 13133 |||| ||||||||||||||||||||||| | || |||| | |||||| | || ||||||| Sbjct 181 AAAAGCGCCCTGCATGGGCTCCTTTGGATCATATGTTTCTTGAAGTCTCGCATTATCCAG 240 Query 13134 GGGGACGTTTGATAAGAACACAAACAAAAATGAGAAAAATAAATGTACCAGTTTCATTAT 13193 | || | || || | |||||||| ||||||||||| || || || || || ||| Sbjct 241 GAGGTAGGTTACTACGCACACAAACTAAAATGAGAAAGATTTTAGTTCCTATTGCACTAT 300 Query 13194 TTTATGAATCTATGGAAGAGGCTGAAAAGTTAAAGGAAGAAATAGCTAACTGGCTTATTA 13253 | ||||| || ||||| |||||||| |||| ||||||||||| | ||||| ||| Sbjct 301 TATATGACTCAGCTGAAGAAGCTGAAAAACTAAAAGAAGAAATAGCAGATTGGCTCGTTA 360 Query 13254 CAGACCAACCTCAAGAACTGATCTTTGATGATGAAAAAGATCGCACGTATTTGGCTGTTA 13313 | || ||||| || || || |||||||||||||||||||| |||| ||| ||||| Sbjct 361 CGGATCAACCGTGCGAGCTTATTTTTGATGATGAAAAAGATCGTACGTTTTTAGCTGTCG 420 Query 13314 TTGATGAATCTTTTGACCCACAGCAATTAGTGAATTTAGGAGAAGGAGTACTT--ACTTT 13371 | |||||| |||| || | |||| ||||| || |||| ||||| ||||| ||||| Sbjct 421 TAGATGAAACTTTAGATTTAGAGCAGTTAGTTGATCTAGGTGAAGG--TACTTTAACTTT 478 Query 13372 TGTTTGTGAAATGCCATATAAGTTAGGTCCTACTAAAACGGTAGAATTTGAAATGGATGG 13431 ||||| |||||||||||||||||| ||||||| || ||| ||| |||| Sbjct 479 CATTTGTCCAATGCCATATAAGTTAGGAAAAGAGCAAACGGTTGACTTTAAAAAAGATGT 538 Query 13432 ACGTGGGTTAATAGCAAATGTTCAAAATAAAGGAACTGTTCATTCTAATCCTATTGTTGA 13491 |||||||| | || ||||| |||||||||||||||||||||||||| ||||| |||| Sbjct 539 TAGTGGGTTAGTTGCTAATGTCCAAAATAAAGGAACTGTTCATTCTAACCCTATCATTGA 598 Query 13492 GATTGAAATTACGAAGCCAAACACTTTTTTAGATGTGTGGTTTGGTGGGGTATCTTTAAG 13551 |||||| |||||||| ||||| |||||| |||| || ||||| || |||||||||||||| Sbjct 599 GATTGATATTACGAAACCAAATACTTTTCTAGACGTATGGTTCGGCGGGGTATCTTTAAG 658 Query 13552 TGATCGAGATTATTTTCGTATCGGAATGCCACTAAAAACTGTGGAAAAGCCTGTAGAAAG 13611 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 659 TGATCGAGATTATTTTCGTATCGGTATGCCACTAAAAACTGTGGAAAAGCCTGTAGAAAG 718 Query 13612 GAATCAACGTATAATATGGGATGAAATGACCACTACTGTTGGATGGAGTAAAGTCAGTAC 13671 ||||||||||||| |||||||||||||| | ||||| || ||||||||||||||||| | Sbjct 719 GAATCAACGTATATTATGGGATGAAATGGCTACTACGGTCGGATGGAGTAAAGTCAGCTC 778 Query 13672 AATGGAAGATGGTGAGCCAGTCGGCGAAATGAAATCAGATAAATATCAATTTTATTGTTC 13731 |||||||||||| || || || || ||||||||||||||||||||||||||||||||||| Sbjct 779 AATGGAAGATGGGGAACCGGTTGGTGAAATGAAATCAGATAAATATCAATTTTATTGTTC 838 Query 13732 TGATTTTGGTACAGGAACAGGTAAAGGATGGCATGGCGCCGCTGTCaaaaaaaGTATCCC 13791 |||||||| || ||||| || ||||||||||| || || ||||| |||||||||||||| Sbjct 839 CGATTTTGGAACTGGAACGGGAAAAGGATGGCACGGTGCAGCTGTTAAAAAAAGTATCCC 898 Query 13792 TGGTGGCCCAGTAGAAGATTTTATCATGCAAGCTTACGTTACTTGTAAGAGCAAGAAAAT 13851 |||||||||||| |||||||||| |||||||| || ||||| |||||||| || || || Sbjct 899 TGGTGGCCCAGTGCAAGATTTTATTATGCAAGCCTATGTTACATGTAAGAGTAAAAAGAT 958 Query 13852 TAATGAAATGGGACGAGTTGAGATAGCAATACTCGATGAAAATAGTAAGGTACTTTCAAA 13911 ||| ||||||||||| ||||||||||| |||||||||||||| ||||| || ||||| || Sbjct 959 TAACGAAATGGGACGGGTTGAGATAGCGATACTCGATGAAAACAGTAAAGTGCTTTCGAA 1018 Query 13912 AATCGCTATGAACGATCTCTATTGGCAAGCCGAACAAAATTTCGGAACAATGGTTATTGG 13971 ||| ||||||| ||| | | ||||||||| | |||||| |||||||||||||| || || Sbjct 1019 AATAGCTATGACTGATGTGTTTTGGCAAGCTG-ACAAAACTTCGGAACAATGGTAATCGG 1077 Query 13972 ATACGATAATAA 13983 || |||||||| Sbjct 1078 TTATGATAATAA 1089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164187386049792