Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_029024.1 Length=56505 Score E Sequences producing significant alignments: (Bits) Value seq22073 257 6e-64 seq26745 127 7e-25 >seq22073 Length=2817 Score = 257 bits (284), Expect = 6e-64 Identities = 355/481 (74%), Gaps = 28/481 (6%) Strand=Plus/Plus Query 42637 AGGAGGCAATGTAAATGATGGAAGAAAGCACATTCTCACATTTTATGATACTGGTAATTG 42696 ||||||| | ||||||||||||||||| |||||||||||||| ||||| | || || Sbjct 419 AGGAGGCGGTTTAAATGATGGAAGAAAGTACATTCTCACATTTGATGATTTTAGTTATAT 478 Query 42697 TCATTTTGACCGCAGGATTCATTCGTCTGATGGATTGGATAGATAAAAGGTTTATGAAGG 42756 |||||||| |||||||||| | | ||| |||||||||| | | ||| ||| | || Sbjct 479 TCATTTTGCTTTACGGATTCATTCATTTTATGAATTGGATAGACAGACGGTATATAAGGG 538 Query 42757 ATGAAAAGTGATGGATAGACAGCAGCGGGACAAAGAAG-AGAAAGCAAACAT-CATCAAA 42814 ||||||| ||||||||| ||||||||| || || | | | ||| |||| | ||| Sbjct 539 ATGAAAAATGATGGATAAACAGCAGCGTGATGAATACGAACAAAAGAAACTTGCAT--GG 596 Query 42815 ATGATACGTGATTTAAAAGATAAAGGGTTACATAGAAGTGCATATAAGATTTGGGAAATG 42874 || ||| ||||||| || || |||| |||| | || ||| ||||| || ||||||| Sbjct 597 ATCATAAAGGATTTAAGAGCTAGAGGGATACACAACAGCGCAAATAAGGTTGAGGAAATG 656 Query 42875 CATAAGGAGTTTATCACTCTAGCTAAATAGGACAAGCGTTGTGCTTGTCATCATGATCAG 42934 |||||||||||||| |||||||||||||||||||||| || ||||||| ||| |||| Sbjct 657 CATAAGGAGTTTATAACTCTAGCTAAATAGGACAAGCCTT-CGCTTGTCGGAATGTTCAG 715 Query 42935 GAGCGGACACCCTTTCCCCTCCACCT--------CGTTTCTGGTCATGATGATGCGT-AC 42985 || | | | |||| |||||| ||| |||| || ||||||| | Sbjct 716 GAATCTA-ATGGTATCCC--CCACCTAATTCAAAGGTTCCTGGATATTCCGATGCGTGAA 772 Query 42986 AGCATCAAAACAAAATAAAAACCATTCGAC-TACGCCTAATCGAATGGTTTGAGAAACAA 43044 |||||||||||||| |||||| | || | ||| ||||| || | || ||||||| Sbjct 773 AGCATCAAAACAAAGTAAAAAAC---CGCCTTACCCCTAA--GACGGTTTGGAGAAACTT 827 Query 43045 CAGATTATTATGTACCTCTATTATATCACAGTCGTTTCTTCTAAGTAAATAAGGAGTGAA 43104 || | | ||||||||| |||||||||| || |||||| || | ||| |||||| ||| Sbjct 828 CA-AAAAGTATGTACCTATATTATATCAAAG-AGTTTCTCCTCA--AAACAAGGAG-GAA 882 Query 43105 A 43105 | Sbjct 883 A 883 >seq26745 Length=31949 Score = 127 bits (140), Expect = 7e-25 Identities = 252/369 (68%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 27831 TTTTTTATTTGAATTCAACATAATATTTATTATTAATAATTCCAAACGCCACTTTTCTTG 27890 ||||||||||||||||||||| |||||| || | ||||||||||| || ||| | | || Sbjct 15905 TTTTTTATTTGAATTCAACATGATATTTTTTGTCTATAATTCCAAAAGCAACTGTACATG 15964 Query 27891 GGAAGGGTTTGTATCCTTCTAACACTGCGTTCATACAGTGTTGAACCCATTTTTCTAATT 27950 | || || || | | || || | | || |||||| ||||||| | ||||| || Sbjct 15965 GAAACGGATTTTTTTCTACTGAAGCAGCACGCATACAAGAAAGAACCCAATGTTCTAGTT 16024 Query 27951 CTATTGGTAAGCGATACGCTTTAACGCTCCCATCACAATTTTTAATTGTTGCTACT---T 28007 ||| ||||||||||| |||| || || |||||| ||||| | |||| || | | Sbjct 16025 CTAAAGGTAAGCGATATGCTTGAATACTACCATCATTGTTTTTCACTGTT-ATAATCGGT 16083 Query 28008 GTA-TGACGGTCCTTGACATTGTAATTCTATCCATTGAAACCGCTGCAACGTCGTCCTTT 28066 | | | || ||| | | || | |||||| ||| | | | | || | || || Sbjct 16084 GCATTTAC---CCTGGTAGTAGTGAAACTATCCGTTGTTAGCATTCCTACTGCATCATTA 16140 Query 28067 CCGGCAGTACCAACACTAAGAACTTCATATACTGGCGCGTCTTCTTCTTTAAGAATCATA 28126 | | |||| |||| ||||||||||| | | |||| ||| |||| |||||| Sbjct 16141 GTGTGAAAACCAGCACTTAGAACTTCATAAATCATTCCATCTTTTTCATTAATAATCATT 16200 Query 28127 GGTATGTTCAAATACTCAAAATCATTGATATTATCATAAATAATAGCTCCAGCTTGGTTT 28186 ||||| || |||| | ||| ||| ||||| | | |||||| ||||| ||| ||| Sbjct 16201 GGTATATTTAAATGTGGATAATTATTTATATTGTTGTGAATAATTGCTCCTGCTGCGTTC 16260 Query 28187 CTTCTTACT 28195 | |||||| Sbjct 16261 TTCCTTACT 16269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180625957139838