Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2070 95.1 1e-14 seq31154 86.0 5e-12 seq27420 86.0 5e-12 >seq2070 Length=221348 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 118464 TTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTC 118523 ||||||||| || |||||||| | ||| ||||| ||||| || | || || | || || Sbjct 201435 TTTCAGTGGTTCGATGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATC 201494 Query 118524 ACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTAC 118583 || ||| | || || |||| ||||||||||||||||| | | | ||| ||||| | Sbjct 201495 TCCTGGTTTGAGGCCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGAT 201554 Query 118584 ATTAAAAGGAACACCCAGACCC 118605 || ||||| || ||||||||| Sbjct 201555 GTTGAAAGGCACTCCCAGACCC 201576 >seq31154 Length=245217 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 118464 TTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTC 118523 ||| ||||| || |||||||| | ||| ||||| ||||| || | || || | || || Sbjct 181061 TTTGAGTGGTTCGATGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATC 181002 Query 118524 ACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTAC 118583 || ||| | || || |||| ||||||||||||||||| | | | ||| ||||| | Sbjct 181001 TCCTGGTTTGAGACCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGAT 180942 Query 118584 ATTAAAAGGAACACCCAGACCC 118605 || || || || ||||||||| Sbjct 180941 GTTGAAGGGCACTCCCAGACCC 180920 >seq27420 Length=320187 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 118464 TTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTC 118523 ||| ||||| || ||||||| | ||| ||||| ||||| || | || || | || || Sbjct 118968 TTTGAGTGGTTCGGTGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATC 119027 Query 118524 ACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTAC 118583 || ||| | || || |||| ||||||||||||||||| | | | ||| ||||| | Sbjct 119028 TCCTGGTTTGAGGCCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGAT 119087 Query 118584 ATTAAAAGGAACACCCAGACCC 118605 || ||||| || ||||||||| Sbjct 119088 GTTGAAAGGCACTCCCAGACCC 119109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414315674345908