Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq31154 123 2e-23 seq2070 122 7e-23 seq27420 114 1e-20 >seq31154 Length=245217 Score = 123 bits (136), Expect = 2e-23 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 || ||||| | ||| | || || || || ||||| |||| |||||| ||||| ||||| Sbjct 181057 AGTGGTTCGATGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATCTCCT 180998 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 |||| || || || || ||||| |||||||| |||||||||||||| ||||||||||| Sbjct 180997 GGTTTGAGACCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGATGTTG 180938 Query 29768 AAGGGCACCCCGAGCCCC 29785 |||||||| || || ||| Sbjct 180937 AAGGGCACTCCCAGACCC 180920 >seq2070 Length=221348 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTC 29705 |||| ||||| | ||| | || || || || ||||| |||| |||||| ||||| |||| Sbjct 201437 TCAGTGGTTCGATGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATCTC 201496 Query 29706 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29765 | |||| || || || || ||||| |||||||| |||||||||||||| |||||||||| Sbjct 201497 CTGGTTTGAGGCCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGATGT 201556 Query 29766 TAAAGGGCACCCCGAGCCCC 29785 | || ||||| || || ||| Sbjct 201557 TGAAAGGCACTCCCAGACCC 201576 >seq27420 Length=320187 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 || ||||| ||| | || || || || ||||| |||| |||||| ||||| ||||| Sbjct 118972 AGTGGTTCGGTGTGATTGAGATACACATGCGCATCACCCAAGGTGTGCACAAAATCTCCT 119031 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 |||| || || || || ||||| |||||||| |||||||||||||| ||||||||||| Sbjct 119032 GGTTTGAGGCCAGTCACATGAGCAATCATGTATGTGAGGAGAGAGTAACTGGCGATGTTG 119091 Query 29768 AAGGGCACCCCGAGCCCC 29785 || ||||| || || ||| Sbjct 119092 AAAGGCACTCCCAGACCC 119109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406005306213742