Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_031026.1 Length=49167 Score E Sequences producing significant alignments: (Bits) Value seq28821 138 4e-28 >seq28821 Length=465073 Score = 138 bits (152), Expect = 4e-28 Identities = 378/565 (67%), Gaps = 22/565 (4%) Strand=Plus/Minus Query 41210 TCCGGCATTACAAAGCCGTTACCAGTCCAAAGACAAGtttttttGGTGTACGCATCGCGA 41269 |||||||| || ||| ||| | ||||| |||||||| || || | ||| |||||||| Sbjct 124317 TCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATCGCGC 124258 Query 41270 G-CGGGAATGATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGACCTCCAA 41327 | || || | || |||| | ||||| |||| || || | | || || ||| Sbjct 124257 GGCGCGATATACATCGGGAACCAG-GGATGCGCGTCATTCTCAGGAAGATAG-CCGCCAT 124200 Query 41328 ACGCGCAAGGATGAAAGATAAAATCAGGTTGCCGCCACATTGACGACAGAACACTAACAG 41387 || | || |||| ||| || |||| | ||| || ||||| || || || | Sbjct 124199 ACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCACCG 124140 Query 41388 GATTCTCAATCATGTATGGAACGTTAAACCGATCCGCAATATTGGCAGCAATCTTTGCCG 41447 |||||||||| ||||| | ||| | | ||| |||| || || ||||| || | Sbjct 124139 GATTCTCAATTATGTAAGTCACGCCCATGCTATCGCCAATGTTCGCGGCAATACGGGCAG 124080 Query 41448 TTTCAACCGCCTTTTTCTGGAAGTCTGGATCACGTTCACGCTTTGCTG-CAAAGTGACGC 41506 | | || || || | |||||| ||||||||||||||||| |||| |||| || || Sbjct 124079 TAGCGACAGCTTTCTCCTGGAATAGCGGATCACGTTCACGCTT-GCTGGCAAAATGGCGA 124021 Query 41507 GATCCGCTAACAGCTAAATCAGTGCATGGAGGGAATGCAATAATAAAATCTGGAGTGCCA 41566 | || |||||||| | |||||||||||| |||| || ||||||||||| || || || Sbjct 124020 GCACCACTAACAGCAAGGTCAGTGCATGGATGGAAGGCCATAATAAAATCCGGTTTGTCA 123961 Query 41567 AAGACGCGCATCATTGCGTTATGCTGGAA-TGATAATCCGATCCACTCATTCAAATAAAC 41625 | || | | || | | | | | ||| | | || | || | | |||| ||| | Sbjct 123960 TACACACCCGCGATCGTATCACGTTCGAACTTCTCAT-CAATGAAGACGTTCACATACTC 123902 Query 41626 TATGTTGGGATGAGTCACGC--GCACTG---ATTG-GTAATCACCATGATCAGCACCGTC 41679 ||||| ||||| || | || || ||| |||||| || ||||| || ||||| Sbjct 123901 AATGTTCGGATGCTCTACCCTGGCGTTGTACTTTGCGTAATCTCCGTGATCGGCTCCGTC 123842 Query 41680 GAAATTAAAGCACAGCACTTTGTGACCACGTT----CAGCCCACGGCAACGCAGCATAAC 41735 || || ||||||| ||| || ||||| | | ||| || ||| ||||| || Sbjct 123841 AAAGTTGAAGCACATCACCTTATGACCTTGCTTTGCCAGTTCATGGC----CAGCAAGAC 123786 Query 41736 CAGAACCATCAAATAGTGAGAAAAT 41760 | ||||| || |||||||| |||| Sbjct 123785 CGGAACCGTCGAATAGTGACCAAAT 123761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157153251426906