Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq26121 100 4e-16 seq29598 87.8 2e-12 >seq26121 Length=543453 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| || || | ||| || || || || ||||||||||| ||||| || || ||| Sbjct 56963 TCGTCTCTGCTGATGAGTTCATTGGAGAAGGTAAGACCGGGCATGAGTCCTCGCTTCTTG 57022 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || ||||| |||||||| || || ||||| ||||| || || || ||||| ||| Sbjct 57023 AGCCAGAAGATTGCGGCGAAAGAGCCTGAGAAGAAGATGCCCTCCACTGCTGCAAAGGCG 57082 >seq29598 Length=358761 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 77706 ACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTG 77765 ||||||| ||| ||| || | || ||||| ||||| |||||||| || ||||| ||| Sbjct 199661 ACCTCATCAGCACTGGAGTACTCTACGATCTCTGTACACAGATTACTGCACTTGATGGTG 199720 Query 77766 CCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTC 77825 |||| ||||||||||| ||||| || || || |||||| || | || | || || Sbjct 199721 CCCAAGTTTTGTTGGTTACTCTTCTTGTTACAATGGTCCTTGTAGACCATGTAAGGGGTA 199780 Query 77826 CCGGTTTCAATCTGTGATTCGATAAT 77851 || || || |||| || ||||| || Sbjct 199781 CCAGTCTCTGTCTGGGACTCGATGAT 199806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694391826866080