Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_031055.1 Length=43773 Score E Sequences producing significant alignments: (Bits) Value seq21096 118 3e-22 >seq21096 Length=1089 Score = 118 bits (130), Expect = 3e-22 Identities = 197/280 (70%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 15377 TTATCCAGGAGCAAGATTATTAAATACACAGACTGAAATGCGTGTGTTTTCTGTTCCTGT 15436 ||||||||||| || ||| || ||||| ||| ||||| | | ||| |||||| | Sbjct 233 TTATCCAGGAGGTAGGTTACTACGCACACAAACTAAAATGAGAAAGATTTTAGTTCCTAT 292 Query 15437 TGG--TATTAT-TGCTCCATCTGGAGTTGATATGAAAATACTTAGTGAAGATATAGCGAG 15493 || |||||| || || ||| || | | ||||| ||| | ||||| ||||| Sbjct 293 TGCACTATTATATGACTCAGCTGAAGAAGCT--GAAAA-ACTAAAAGAAGAAATAGCAGA 349 Query 15494 TTGGTTAATTACAGATCAACCAAAAGAACTTATTTTCGATACAGAACCTGACAGAACTTA 15553 |||| | |||| |||||||| || |||||||| ||| ||| || | || | Sbjct 350 TTGGCTCGTTACGGATCAACCGTGCGAGCTTATTTTTGATGATGAAAAAGATCGTACGTT 409 Query 15554 TTTAGCTGTTGTAGATGAAGAGTTCGATGCTGATGAGTTTGTAGAAATTGGACAAGGAAA 15613 ||||||||| ||||||||| || ||| || |||| || || | || |||| | Sbjct 410 TTTAGCTGTCGTAGATGAAACTTTAGATTTAGAGCAGTTAGTTGATCTAGGTGAAGGTAC 469 Query 15614 TTTAAAATTCATTTGTCCAATGCCATATAAATTAGGCAAA 15653 ||||| ||||||||||||||||||||||| ||||| ||| Sbjct 470 TTTAACTTTCATTTGTCCAATGCCATATAAGTTAGGAAAA 509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139898989418790