Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_031081.1 Length=45206 Score E Sequences producing significant alignments: (Bits) Value seq28821 91.5 4e-14 >seq28821 Length=465073 Score = 91.5 bits (100), Expect = 4e-14 Identities = 229/341 (67%), Gaps = 8/341 (2%) Strand=Plus/Plus Query 6587 GCATTCCCGCCGTGTACTGATCTGGCGGTGAGCGGTGC--GCCAGCTTTCCCGCGCAAAC 6644 || |||| || || ||||| || || || || ||||| |||| || || || || | Sbjct 123983 GCCTTCCATCCATGCACTGACCTTGCTGTTAGTGGTGCTCGCCATTTTGCCAGC--AAGC 124040 Query 6645 GCGCCCGCGACCCGGCCTTCCAGCTTAAGGCGGTGCGC-ACCGCGAAGATCGCCGCGTAC 6703 | | || || ||| |||||| || || || ||| || || || |||||| || Sbjct 124041 GTGAACGTGATCCGCTATTCCAGGAGAAAGCTGT-CGCTACTGCCCGTATTGCCGCGAAC 124099 Query 6704 CTGGGTGACTTCTTCGAAGTGCCGTATATGATTGAGAATCCGCGCAGTGTGCTTTCCACC 6763 | || || | | | ||| | || || |||||||||||| || || || || | Sbjct 124100 ATTGGCGATAGCATGGGCGTGACTTACATAATTGAGAATCCGGTGAGCGTCCTGTCATCT 124159 Query 6764 CAGTGGCGCAAGCCGGATCACTCATTCGACCCGTGGGAGTATGGGGGATATCTGCCGGAG 6823 ||| | || || ||||||| ||| | || ||||||||||| || ||||| || ||| Sbjct 124160 GCATGGAGAAAACCAAATCACTCCTTCAATCCCTGGGAGTATGGCGGCTATCTTCCTGAG 124219 Query 6824 GATGACGTACACCCGCTCTTCCCGGAATACATCAACGCC-CGCGATTCATATCCGAAGCT 6882 |||||| || || |||||| || ||| |||| |||||| | || |||||| Sbjct 124220 AATGACGCGCATCCCTGGTTCCCGATGTATATC-GCGCCGCGCGATGCTTACCCGAAGAA 124278 Query 6883 GACCTGCTTATGGACCGGCAACGGCTTCCGTATGCCAGAGA 6923 ||| || | |||||| ||| |||| |||||| |||| Sbjct 124279 GACTTGTCTGTGGACCTCTGACGACTTCGTTATGCCGGAGA 124319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144482852499552