Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq7291 239 5e-58 seq24665 165 8e-36 seq29701 96.9 4e-15 seq4325 91.5 2e-13 >seq7291 Length=129899 Score = 239 bits (264), Expect = 5e-58 Identities = 182/214 (85%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 8345 CTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 |||||||||| ||||||||||||| |||||| ||||| |||||| ||||||||||| Sbjct 60367 CTCACTCTGTA-CCCAGGCTGGAGTATAGTGGCACAATCTCGGCTCACCGCAACCTCCGC 60309 Query 8405 CTCCCGG-----GTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAG 8459 ||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 60308 CTCCCGGTCCTGGATCAAGCAATTTTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAG 60249 Query 8460 GCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATG 8519 ||| ||||||| || |||||||||||||||| | ||||| |||||||||||||| Sbjct 60248 GCATCCGCCACCATGCGCAGCTAATTTTTGTATTAAAAAAAGAGACAGGGTTTCACCATG 60189 Query 8520 TTGGCCAGGCTGGTCTCGAACTCCTGACCTCATG 8553 ||||||||||| |||| ||||||||||| ||||| Sbjct 60188 TTGGCCAGGCTTGTCTTGAACTCCTGACNTCATG 60155 >seq24665 Length=708721 Score = 165 bits (182), Expect = 8e-36 Identities = 142/173 (82%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| || ||||||||||||||||||||| |||| | |||| ||||||||||||||||| Sbjct 433798 TCTCGCTGTGTTGCCCAGGCTGGAGTGCAATGGCGAGGTCTCAGCTCACTGCAACCTCCG 433739 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||| |||||||||| ||| ||||| |||||||||| ||||||||| ||||||||| Sbjct 433738 CCTCCTGGGTTCAAGCAATTATCCTGTCTCAGCCTCCCGAGTAGCTGAGATTACAGGTGC 433679 Query 8464 AAGCCACCACGCCAAGCTAATTTTT-GTATTTTTAGTAGAGAGAGGGTTTCAC 8515 | ||| ||| || |||||||| ||| || |||| ||| ||||||||| Sbjct 433678 ATGCCGCCATGCATGAATAATTTTTAGTA-CTTCAGTAAAGATGGGGTTTCAC 433627 >seq29701 Length=706 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/121 (80%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCA-CT-GCAACCTC 8401 |||| || ||||||||||||||||||||| |||| | | || ||||| || ||| | | Sbjct 378 TCTCGCTGTGTTGCCCAGGCTGGAGTGCAATGGCGAGGTGTCAGCTCATCTAGCATCGTG 437 Query 8402 CGCCTCCCGGGTTCAA-GCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTG-GGATTACAG 8459 ||||| |||||||| || ||||||||| |||||||||||||||| || ||| |||| Sbjct 438 GGCCTCAGGGGTTCAATGCAATTCTCCTGTGTCAGCCTCCAGAGTAGATGACGATAACAG 497 Query 8460 G 8460 | Sbjct 498 G 498 >seq4325 Length=134 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| | ||||||||||||||||||||| |||| | |||| |||| |||||| || | Sbjct 32 TCTCGCGGTGTTGCCCAGGCTGGAGTGCAATGGCGAGGTCTCAGCTCGATGCAACATCTG 91 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 | || |||||||||| ||| ||||| |||||||| ||||| Sbjct 92 CATCGTGGGTTCAAGCAATTGTCCTGTCTCAGCCTGACGAGTA 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521280076215800