Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylocentrotus_20purpuratus_20[refseq_20GCF_5F000002235.4_202015 -03-10] 31,897 sequences; 990,915,289 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq26231 98.7 9e-16 seq25132 95.1 1e-14 >seq26231 Length=1354672 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| ||||||||| ||||| ||||| ||||| ||||| | || || Sbjct 552267 ACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCA 552208 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || |||||||| ||||| || || ||||| || || | || | || || |||||| | Sbjct 552207 AGTTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCTTCTTTGTCCTGG 552148 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | | ||| || | ||| ||||| | || || || || Sbjct 552147 ATCTTGGCCTTTACGTTCTCGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTTG 552088 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || ||||| || || ||||||||||| Sbjct 552087 CCGGTGAGGGTCTTGACAAAGATCTGCATGTT 552056 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| | || || || |||||||| ||||| | Sbjct 550949 CCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAGA 550890 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 | || ||||| || || | |||| || || |||||| ||| || ||| | | Sbjct 550889 TGAGACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTCT 550830 Query 41793 ACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 | | ||| || | ||| ||||| | || || || || || || || ||||| || | Sbjct 550829 CGATGGAGTCACTTGGCTCGACCTCGAGTGTGATGGTCTTGCCGGTGAGGGTCTTGACAA 550770 Query 41853 AAATCTGCATGTT 41865 | ||||||||||| Sbjct 550769 AGATCTGCATGTT 550757 >seq25132 Length=791789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || | | ||||||||| || || ||||||||| ||||| ||||||| Sbjct 199759 CGCCACCACGGAGCCTCAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 199818 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 | |||||||| | || || ||||||||||||||||| |||| ||||| || || Sbjct 199819 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATC 199873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462119673616400