Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4076 212 7e-50 seq3622 187 3e-42 >seq4076 Length=468004 Score = 212 bits (234), Expect = 7e-50 Identities = 941/1484 (63%), Gaps = 27/1484 (2%) Strand=Plus/Minus Query 53144 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 53203 || || ||||| ||||| || || | |||| ||||| || ||||| |||||| | ||| Sbjct 422283 TTCACCACTTGGAATTCACCTGAAATCACTCGGCGAGTATAGATATTGCTGGTAAAAGGT 422224 Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263 || |||||||| ||||| || ||||||| || |||||||| |||||| | | Sbjct 422223 TCTGTGGACTCATTGTTTCCAAATATTTGAGATGTGGATGCAGTGGGCATACAAGTAGTC 422164 Query 53264 AATAAACTATTTC-TAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 53322 |||| ||| || | |||| || ||| || || || || || | ||||||| ||| Sbjct 422163 AATAGACTGTTACGTAAG-CCATATTTTGAAATATTTTCCTTCAAGCCATCCCAATCCCA 422105 Query 53323 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGA 53382 | ||| || ||| || ||| ||||| || | ||| || || Sbjct 422104 TAAATCTGATGGTGTTACTCCCCACATATCGTATTGAAGAATCCCTTGACTCGCTGGGGA 422045 Query 53383 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT-AGTTCACAACTCGCCTCTAATG 53441 ||| |||| || || || || || | ||| | ||| | ||| || | ||| | | Sbjct 422044 GCCTTCATAAGTTTCATAAGGACCATGCTTTTG-GCTCAATTCGCATGAAGACTCAAGGG 421986 Query 53442 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 53501 || | | ||| || || || || || || ||||| || || || |||||| ||| | Sbjct 421985 CAGCATGATAGATTGTCTCAAAAATTTTTTTATTAAGTTCATGGGCTTCCTCTGAATCGA 421926 Query 53502 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 53561 | |||||| | | | | |||| || || || ||||||||||| || || || |||| Sbjct 421925 AAGGATAACGCATAATTACATACGCATCAGCCAAACCTTGAACACCTATCCCAATTGGTC 421866 Query 53562 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 53621 |||| | ||||||| || ||||||| |||| ||| ||| | ||| || | || Sbjct 421865 TATGACGACTATTAGATCTTCCAGCTTCAGGAACAGGGTAAAACGAGCGATCAATGACTT 421806 Query 53622 TATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----- 53676 | || | || ||| | ||| | || | ||||| |||| || Sbjct 421805 TGTTCATATTAACAGTAATGATTTTAGTAATTTCGTGAAGTTTCTTGAAATTGAAGGTGG 421746 Query 53677 ---TTGTCCATCTATTACA---AACATGTTCA--ATGC--AATAGATGCCAGATTACAAA 53726 ||| || | ||| || || || | | || ||| || || ||| || | Sbjct 421745 GATTTGATAATTTCTTATTGTCAATATATTTAGGAAGCGAAATGGAACACAAATTGCACA 421686 Query 53727 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 53786 | || ||||| | ||| |||| | ||||| ||||| |||||||| | |||| Sbjct 421685 CAGCAGTTTCATTGGGATCGCTGTATTCGACAATCTCGGTGCATAGATTACTTGATTTGA 421626 Query 53787 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 53846 || ||| | || | ||| ||||| || ||||| || ||||| || || | ||| |||| Sbjct 421625 TGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGCAGGCATCTTTGTAGACAATAAATG 421566 Query 53847 GCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTA 53906 | ||| ||||| || |||| || | || | ||| | | || |||| | Sbjct 421565 GTTGACCTGTTTCGATTTGGGCATCCACTATTGAGAACCACAGTTTTTGGGCTTTTACTT 421506 Query 53907 TAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCC 53966 | | | || | || || |||||| | |||| | | || || || ||||| Sbjct 421505 TCTGTACGAATTTTTTCTCAGATTCGTAGCGCATATAGAGCCTCTCGAATTCTTCTCCGT 421446 Query 53967 AAACATTGTCCAAT---CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 54023 || |||| || || |||||| ||| |||||||||| |||| || ||||| | Sbjct 421445 AAC---TGTCTGATAGGCCGGGACATGCATGAGGACACATCAGACACCAGTCCCCGTCTT 421389 Query 54024 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 54083 ||| |||| |||||| || | ||| || ||||||||||| | ||||| ||| |||| | Sbjct 421388 CCTCAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAATAAATCCCTGGCCC 421329 Query 54084 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143 || ||||||| ||| |||||||| | || || ||||| | | |||||||| |||| Sbjct 421328 TAACTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAAGGAATTCGAAAATATCAGCGTGCC 421269 Query 54144 ACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 54203 | ||||| | || || | | | ||| |||| ||||| || || ||||| | ||| | Sbjct 421268 AGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACCTTGATCGACGTAAC 421209 Query 54204 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCC 54263 | | ||| || | || || | |||||| | | ||| || || | || || | Sbjct 421208 GGGATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGAAGTGCCGCACGTTC 421149 Query 54264 CGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCA 54323 | | ||| | ||| ||| ||||| || | || || || || || || Sbjct 421148 CAGCTATAAATGAACCAGAGGCTCGAATGTTGTGCACATGTAACCCGATTCCACCAGCAT 421089 Query 54324 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 54383 ||||| || |||||| | || || || | || |||| || || ||||| Sbjct 421088 ACTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCCTTGATGCTGTCATCTT 421029 Query 54384 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 54443 ||||| || | || || |||| || ||| || | | || ||||| || || | Sbjct 421028 TCATGGCAATCAAGAAGCAACTAGCCAACTGGCCACAGTTCGAACCAGCATTGAACAATG 420969 Query 54444 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGT 54503 | || | |||||| || | | |||||| | || | ||| || | |||| | Sbjct 420968 TCGGGGTAGCGTGTGTGTAGTAGGCTTCAGACAAGAGGTCGTAGGTGGACAAAGCTTGTT 420909 Query 54504 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 | ||||| || | || ||| | |||||||| | ||| | ||| || || ||||| || Sbjct 420908 CAATATCATCAAGGTTG-ATTGCAACTGCGACCCTCATGAGCATATGTTGGGGTCTCTCG 420850 Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 || | || ||| | ||| | ||| |||||| ||||| || Sbjct 420849 ACTACTTTCCCGTTCAATTTAATCAAATAGGATCGCTCCAATGT 420806 >seq3622 Length=296610 Score = 187 bits (206), Expect = 3e-42 Identities = 628/985 (64%), Gaps = 116/985 (12%) Strand=Plus/Minus Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 |||| ||||| || || || |||||||||||||| ||||| ||||| | ||| || | Sbjct 278639 TTTGATATTCCCCGACGCGCTTTTCGAAAAAATTTGTTTTTCCTTCCATTGAGATCAGAT 278580 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGAT------------------TCTTTTA- 23945 ||||||||||| ||||||| | |||| |||| | |||| Sbjct 278579 CCATGAAATCGAATGGATTTTCAGCATTGAAGATCTGGTGTAAAAAAAAGAGTACTTTAT 278520 Query 23946 --AATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTT 24003 || || | | | || | | ||| ||||||||||| |||||| || || ||| | Sbjct 278519 CGAAACCAAGGGCCAACATGAGGCGATCAGCGACAAACTCAATATAT--TTGCA-CATCT 278463 Query 24004 CACA---ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAA 24060 || ||||||||| || | | || || || || |||| | ||| |||| ||| | Sbjct 278462 CAATGGCATTCATTCCGATCAAACTCACAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGA 278403 Query 24061 TAGAGACCGCGTCTGTTATAATAGATCTT------ACTGTTTCTTCACTCGGTGGATACA 24114 | || || || ||||| |||| | | || | | ||| | || Sbjct 278402 TTTCAACTGCATCCACAATAAT---TCTTTGAACCAGAGATTGT------GATGGTTTCA 278352 Query 24115 A---TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAA 24171 |||||| |||||||||| ||||||||||| || || ||||| || || || | Sbjct 278351 CGGTTAAATGACTAAACATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTGA 278292 Query 24172 TTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 24231 | | ||| || || | | || ||||||| ||||||||||| | |||||| |||| Sbjct 278291 TGAGTTCATTACTGAAGGCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATGG 278232 Query 24232 ACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA------------ 24279 |||||||| |||||||||||||||||||| || | |||||||||| Sbjct 278231 CAGCAAATGAACCAGAAAAGAAAATTCCTTCGACAG-AGCAAAGGCAACTACCCTCACAT 278173 Query 24280 --TAA---GTCTTTCT-------CCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCC 24327 ||| | || | | ||| | || | || ||||| || |||||| Sbjct 278172 TGTAAGGTGCCTATATTAGGATAATATATACTCTACTTTGATCGATCCATTTGAGAGCCC 278113 Query 24328 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 24387 ||| ||||| || ||||| || | || || | |||| ||||| | | || Sbjct 278112 AATTAGCCTTTTTAGCAACACATGGTAACGTTTCAACAGCACGAAAGAACTTCATACGTT 278053 Query 24388 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 24447 ||| |||||||||| ||||| || ||||||||||| ||||| |||||||||| ||||| Sbjct 278052 CATCTATATCTTTAACGTATGTGTCGATCAAAAGACTGTACATCTCCGAATGAACGTTTT 277993 Query 24448 CAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAA 24507 ||| |||| || |||||||||||| | | || || | | || | ||| |||| Sbjct 277992 CAACAGCCACCTGGAATCCGTAGAAAAAACGTGCTTCAGGTGTTTGAGCCTCT-CGCAAA 277934 Query 24508 ATCGTT-----CTG--------------------CTAAATTTTCATTCACTATTCCGTCA 24542 | |||| ||| ||| |||||| |||||||| || ||| Sbjct 277933 AACGTTTCAGCCTGAATAATAAGGGAAGATCTTACTAGATTTTCGTTCACTATCCCATCA 277874 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGTTT 24601 || || |||||||| || | || | || |||| | || | | | | ||| | Sbjct 277873 CTCGCAGCAAAAAAAGCGAGCACGTAAGAAATGAAATGACGTTCCCCCGGCTTTTAAATA 277814 Query 24602 A----------TT---------CCAATCATTGATATCTTTAGATATATCCACTTCTTCCA 24642 | || |||||||| || || ||||||| |||||| ||||| | Sbjct 277813 AACGAAAAACCTTCAAATTCGCCCAATCATCGAGGTCCTTAGATAAATCCACCTCTTCGA 277754 Query 24643 CTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTG 24702 | |||||||| || ||| | |||||||| || | | ||| || ||||| || | || | Sbjct 277753 CAGTCCAAAACGAAGCCACCGCCTTTTTGTAGAATTCCCAAATATCATGGTAGTTGATAG 277694 Query 24703 GAAAAATAACAAATCTATTTGGATT 24727 |||| ||||| || | ||| ||||| Sbjct 277693 GAAAGATAACGAAACGATTAGGATT 277669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593678874309360