Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq567 91.5 1e-13 >seq567 Length=338301 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| | ||| || |||| || | |||||| ||||| || || || || || | Sbjct 137470 CCCCTC--AACCTAAGAACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGCTTA 137527 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 || | | ||||| |||||||| || || |||| |||||||| || || ||| | Sbjct 137528 AAGTGCGACCATCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAA 137587 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||||| ||||| ||| ||| | |||| || ||||||| | Sbjct 137588 TTCCTTCCTTGTCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACAT 137647 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| ||||| ||||| |||||||| ||||| || || || |||||| Sbjct 137648 CCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCATT 137694 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || ||| || |||| || | || || || || || ||||||||||| Sbjct 137009 TTCCACCTCTCAACCTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCAC 137068 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || || | || || || || || || ||| |||| ||||||||||| ||| || Sbjct 137069 TCAGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGG 137128 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| || || | |||| ||| |||||| Sbjct 137129 GAATTCCTTCCTTGTCCTGGATCTTAGACTTAACAGTCTCAACAGAGTCATTGGGCTCAA 137188 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || || || || || | |||||||| || |||||||| Sbjct 137189 CATCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGACGAAAATTTGCAT 137237 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || ||| || |||| || | || || || || || ||||||||||| Sbjct 137693 TTCCACCTCTCAACCTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCAC 137752 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || || | || || || || || || ||| |||| ||||||||||| ||| || Sbjct 137753 TCAGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGG 137812 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| || || | |||| ||| |||||| Sbjct 137813 GAATTCCTTCCTTGTCCTGGATCTTAGACTTGACAGTCTCAACAGAGTCATTGGGCTCAA 137872 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || || || || || | |||||||| || |||||||| Sbjct 137873 CATCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGACGAAAATTTGCAT 137921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422229572843012