Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq567 93.3 4e-14 >seq567 Length=338301 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || ||||| ||||| |||| || || ||| Sbjct 137921 ATGCAAATTTTCGTCAAAACACTCACTGGTAAAACAATCACTCTCGATGTTGAGCCCAAT 137862 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| || | || ||||| || || | ||||| || || || ||| |||| ||| Sbjct 137861 GACTCTGTTGAGACTGTCAAGTCTAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 137802 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| || | || || || || || || || | ||||| || | ||||| ||| Sbjct 137801 CAGAGACTGATTTTTGCCGGAAAGCAACTTGAAGATGGCCGCACTCTGAGTGACTATAAC 137742 Query 40870 ATCCAGAAGGA 40880 |||||||| || Sbjct 137741 ATCCAGAAAGA 137731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || ||||| ||||| |||| || || ||| Sbjct 137237 ATGCAAATTTTCGTCAAAACACTCACTGGTAAAACAATCACTCTCGATGTTGAGCCCAAT 137178 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| || | || | ||| || || | ||||| || || || ||| |||| ||| Sbjct 137177 GACTCTGTTGAGACTGTTAAGTCTAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 137118 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| || | || || || || || || || | ||||| || | ||||| ||| Sbjct 137117 CAGAGACTGATTTTTGCCGGAAAGCAACTTGAAGATGGCCGCACTCTGAGTGACTATAAC 137058 Query 40870 ATCCAGAAGGA 40880 |||||||| || Sbjct 137057 ATCCAGAAAGA 137047 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| | || || || || || || | || || || ||| Sbjct 137694 AATGCAGATTTTCGTGAAAACCTTAACCGGTAAGACAATTACTCTGGATGTGGAGCCCAA 137635 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| || | ||| | || || |||| ||||| || || || ||| | || || Sbjct 137634 CGACTCTGTTGAGACGGTAAAATCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCA 137575 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||| || | ||| || |||||||| || || | ||||| | | ||| ||||| Sbjct 137574 ACAGAGACTGATTTTCGCAGGAAAACAGCTTGAGGATGGTCGCACTTTAAGCGATTACAA 137515 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || || | || | | |||||||| || Sbjct 137514 TATCCAGAAGGAATCCACTCTCCACTTGGTTCTTAGGTTGAGGGGTGG 137467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515182123538320