Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq567 149 9e-31 >seq567 Length=338301 Score = 149 bits (164), Expect = 9e-31 Identities = 178/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||||| || |||||||| || || | || |||| | ||| Sbjct 137465 ATGCAAATCTTTGTTAAAACACTTACTGGCAAAACGATCACCCTTGATGTTGAGCCCAAT 137406 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | | | | |||| ||||| ||||| || ||||| || || ||||||||| Sbjct 137405 GATTCTGTCGAGACTGTAAAGTCTAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCAA 137346 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATAA 124717 || || || |||||||| || |||||||| |||||| |||| ||| |||| |||||||| Sbjct 137345 CAGAGACTGATTTTTGCCGGGAAACAATTGGAGGATGGTCGCACACTTAG-CGATTATAA 137287 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || |||||||| ||| | || |||||| | || || |||||||||| ||| || Sbjct 137286 CATCCAGAAAGAATCTACTCTCCACTTGGTTCTTCGATTGAGAGGTGGTATGCAAATTT 137228 Score = 120 bits (132), Expect = 5e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||||| || || ||||| || ||| | || | || |||| Sbjct 136304 ATGCAAATTTTTGTCAAAACACTCACCGGAAAAACGATCACTCTGGATGTGGAGCCAAAC 136245 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | || | | | || || || ||||| || ||||| || || || |||||| Sbjct 136244 GACTCTGTTGAGACTGTGAAGTCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGATCAA 136185 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATAA 124717 || || || ||||||||||| || ||||| |||||| |||| || |||| |||||||| Sbjct 136184 CAGAGACTGATTTTTGCAGGGAAGCAATTGGAGGATGGTCGTACGCTTAGC-GATTATAA 136126 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||| || |||||||| || | ||||| |||||| | | || ||||| Sbjct 136125 TATCCAGAAAGAATCTACACTTCATTTAGTTTTAAGACTTCGTGGTGG 136078 Score = 111 bits (122), Expect = 2e-19 Identities = 119/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 124615 TAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTG 124674 ||||| || |||||||| || ||||| || || || |||||||| || || ||||| | Sbjct 137617 TAAAATCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCAACAGAGACTGATTTTCG 137558 Query 124675 CAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAA 124734 |||||||||| | |||||| |||| || ||| ||||| ||||| || || ||||| | Sbjct 137557 CAGGAAAACAGCTTGAGGATGGTCGCACTTTAAGCGATTACAATATCCAGAAGGAATCCA 137498 Query 124735 CTTTGCATTTGGTT-TTACGTTTACGAGGTGGTAT 124768 || | || |||||| ||| ||| | | |||||||| Sbjct 137497 CTCTCCACTTGGTTCTTAGGTTGA-GGGGTGGTAT 137464 Score = 89.7 bits (98), Expect = 8e-13 Identities = 97/122 (80%), Gaps = 5/122 (4%) Strand=Plus/Minus Query 124650 CCTGATCAACAA-AGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAG 124707 || ||||||| | || || |||||||| || || ||||| |||||| |||| || |||| Sbjct 136650 CCCGATCAACTAGAGACTGATTTTTGCCGGGAAGCAATTGGAGGATGGTCGCACGCTTAG 136591 Query 124708 AAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT-TTACGTTTACGAGGTGGT 124766 |||||||| || || |||||||| ||| ||||||||||| ||| ||| | ||||||| Sbjct 136590 T-GATTATAACATCCAGAAAGAATCTACTCTGCATTTGGTTCTTAGGTTGA-GAGGTGGA 136533 Query 124767 AT 124768 || Sbjct 136532 AT 136531 Score = 84.2 bits (92), Expect = 3e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||||||||| ||||| || || ||||||||||| || || |||||||| || || Sbjct 136448 AAGATTCAAGATAAGGAAGGAATTCCCCCTGATCAACAGAGACTGATTTTTGCCGGTAAG 136389 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || || | || || | || |||||||| || || ||||| ||| | || Sbjct 136388 CAGCTTGAAGACGGCCGCACTCTGAGTGACTATAATATCCAGAAGGAATCTACTCTCCAC 136329 Query 124743 TTGGTT-TTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||| ||| ||| | | |||||||| ||| || Sbjct 136328 TTAGTTCTTAGGTTGA-GGGGTGGTATGCAAATTT 136295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755401635497600