Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq567 113 7e-20 >seq567 Length=338301 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||||||| || ||||| | ||||||||||| ||||||||||| | Sbjct 136078 CCACCACGAAGTCTTAAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATCGCTA 136137 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || ||||| || || |||||||||| ||| || ||||| |||||| Sbjct 136138 AGCGTACGACCATCCTCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGA 136197 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 136198 ATTCCTTCCTTGTCTTG 136214 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | ||||| || | |||||||||||| || |||||||| | Sbjct 137239 CCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATGTTATAATCGCTA 137298 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || |||||||| || |||||||||| ||| || ||||| |||||| Sbjct 137299 AGTGTGCGACCATCCTCCAATTGTTTCCCGGCAAAAATCAGTCTCTGTTGATCAGGAGGA 137358 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 137359 ATTCCTTCCTTGTCTTG 137375 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | || | ||||| || | ||||||||||| || ||||| || Sbjct 137009 TTCCACCTCTCAACCTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCAC 137068 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||| | || ||| || | ||| ||||| |||||||||| ||| ||||||||||| | Sbjct 137069 TCAGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGG 137128 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| || || || Sbjct 137129 GAATTCCTTCCTTGTCCTG 137147 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | || | ||||| || | ||||||||||| || ||||| || Sbjct 137693 TTCCACCTCTCAACCTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCAC 137752 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||| | || ||| || | ||| ||||| |||||||||| ||| ||||||||||| | Sbjct 137753 TCAGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGG 137812 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| || || || Sbjct 137813 GAATTCCTTCCTTGTCCTG 137831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743472893981440