Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3622 149 6e-31 >seq3622 Length=296610 Score = 149 bits (164), Expect = 6e-31 Identities = 612/964 (63%), Gaps = 101/964 (10%) Strand=Plus/Minus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||| | || | |||||| || ||||||||||||||||| | ||| || | Sbjct 278639 TTTGATATTCCCCGACGCGCTTTTCGAAAAAATTTGTTTTTCCTTCCATTGAGATCAGAT 278580 Query 16005 CCATAAAATCAAAAGGATTTT-----TTGAACA---------------ATAGTA-TTTAT 16043 |||| ||||| || ||||||| ||||| | | |||| ||||| Sbjct 278579 CCATGAAATCGAATGGATTTTCAGCATTGAAGATCTGGTGTAAAAAAAAGAGTACTTTAT 278520 Query 16044 CGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCAT-TAAA 16102 || | || | |||||| | | ||| || ||||| || ||||| | ||| | || Sbjct 278519 CGAAACCAAGGGCCAACATGAGGCGATCAGCGACAAACTCAATATATTTGCACATCTCAA 278460 Query 16103 TCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATA 16162 | || |||||||| || || | ||||| | |||||| || ||||| | |||||| || Sbjct 278459 TGGCA-TTCATTCCGATCAAACTCACAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGATT 278401 Query 16163 TTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACG-GAGGGTTTAA----TA 16217 | ||| || || | || || |||| | || | | | || ||||| | || Sbjct 278400 TCAACTGCATCCACAATAAT---TCTT--TGAACCAGAGATTGTGATGGTTTCACGGTTA 278346 Query 16218 AGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACT 16277 | || ||||||| | || || |||||| ||| | ||| || ||||| || || | | Sbjct 278345 AATGACTAAACATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTGATGAGTT 278286 Query 16278 CGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAA 16337 | || || | | || ||||||| || || ||||| | |||||| || || |||| Sbjct 278285 CATTACTGAAGGCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATGGCAGCAA 278226 Query 16338 ATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG 16397 |||||||||||||||| || ||||| || | ||||| ||||| | | | || ||| | Sbjct 278225 ATGAACCAGAAAAGAAAATTCCTTCGACAG-AGCAAAGGCAACTACCCTCACATTGTAAG 278167 Query 16398 TT--CTAtttt----------------tactt---tctatccattttttagcccaatttg 16436 | |||| || ||||| || |||||||| ||||||||| | Sbjct 278166 GTGCCTATATTAGGATAATATATACTCTACTTTGATCGATCCATTTGAGAGCCCAATTAG 278107 Query 16437 ctttttgtttAACACA-GTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTG 16495 | |||| |||||| | | | ||| || | ||| ||| || | | ||| | Sbjct 278106 CCTTTTTAGCAACACATGGTAACGTT-TCAACAGCACGAAAGAACTTCATACGTTCATCT 278048 Query 16496 CTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATT 16555 ||||| || || || || || | | ||| ||||| || ||||||| || || | Sbjct 278047 ATATCTTTAACGTATGTGTCGATCAAAAGACTGTACATCTCCGAATGAACGTTTTCAACA 277988 Query 16556 GCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTT 16615 || | ||| || || || || | | ||||| | | |||| | || ||||| || Sbjct 277987 GCCACCTGGAATCCGTAGAAAAAACGTGCTTCAGGTGTTTGAGCCTCTCGCAAAAACGTT 277928 Query 16616 TCTGC--------TAAG----------------TTTTCGTTAACTATTCCATCGCTAGCT 16651 || || |||| |||||||| ||||| ||||| || || Sbjct 277927 TCAGCCTGAATAATAAGGGAAGATCTTACTAGATTTTCGTTCACTATCCCATCACTCGCA 277868 Query 16652 GCAAAAAACGCAAGTATGTGTTTAATAAAAt----tt--------ttttCGTTATCTG-- 16697 |||||||| || || | || ||| |||| || |||| || | Sbjct 277867 GCAAAAAAAGCGAGCACGTAAGAAATGAAATGACGTTCCCCCGGCTTTTAAATAAACGAA 277808 Query 16698 AAAGTTTTAA------CCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCC 16751 ||| || || ||| ||| | || || |||||||| |||||||| ||||||| Sbjct 277807 AAACCTTCAAATTCGCCCAATCATCGAGGTCCTTAGATAAATCCACCTCTTCGACAGTCC 277748 Query 16752 AAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 |||| ||||| || |||||||| || | || ||| || || | ||| |||||||| | Sbjct 277747 AAAACGAAGCCACCGCCTTTTTGTAGAATTCCCAAATATCATGGTAGTTGATAGGAAAGA 277688 Query 16812 CAAC 16815 ||| Sbjct 277687 TAAC 277684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462478716480200