Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4076 185 8e-42 seq567 116 3e-21 >seq4076 Length=468004 Score = 185 bits (204), Expect = 8e-42 Identities = 414/617 (67%), Gaps = 6/617 (1%) Strand=Plus/Minus Query 23267 TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGACT 23325 || ||||| | ||||||| ||| | |||||||| || |||| |||||||| |||| Sbjct 421461 TCGAATTCTTCTCCGTAACTGTCTGATAGGCCGGGACAT-GCATGAGGACACATCAGACA 421403 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| ||| | ||||| | | |||| || | |||||| ||||| |||||| || Sbjct 421402 CCAGTCCCCGTCTTCCTCAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAA 421343 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 | || | ||| | || ||||| || || ||||| | | || | || || || Sbjct 421342 TAAATCCCTGGCCCTAACTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAAGGAATTCGAA 421283 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 | || || ||||| || || || |||| ||||| | || || ||||| || || || Sbjct 421282 AATATCAGCGTGCCAGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACC 421223 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 |||||||||||||||| | ||||||| | || || ||||| || ||||||||||| || Sbjct 421222 TTGATCGACGTAACGGGATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGA 421163 Query 23566 CGCGCCGCCTACG--CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 | ||||| ||| || || | | ||||| ||||||| |||||| || || || Sbjct 421162 AGTGCCGC--ACGTTCCAGCTATAAATGAACCAGAGGCTCGAATGTTGTGCACATGTAAC 421105 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || | | || || || |||||||| ||| |||||| | || ||| Sbjct 421104 CCGATTCCACCAGCATACTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCC 421045 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 | ||||||||| ||||| | || | |||||| || || || || | | || | Sbjct 421044 TTGATGCTGTCATCTTTCATGGCAATCAAGAAGCAACTAGCCAACTGGCCACAGTTCGAA 420985 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 | || ||||| ||||||| | ||||| || |||| | | |||| || | ||| Sbjct 420984 CCAGCATTGAACAATGTCGGGGTAGCGTGTGTGTAGTAGGCTTCAGACAAGAGGTCGTAG 420925 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 ||| | || ||||| || || || || | | ||||| | ||| | ||| Sbjct 420924 GTGGACAAAGCTTGTTCAATATCATCAAGGTTGATTGCAACTGCGACCCTCATGAGCATA 420865 Query 23864 TATTGAGGTCTCTCGAC 23880 | ||| ||||||||||| Sbjct 420864 TGTTGGGGTCTCTCGAC 420848 Score = 111 bits (122), Expect = 1e-19 Identities = 296/447 (66%), Gaps = 9/447 (2%) Strand=Plus/Minus Query 22431 TCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTT 22490 ||||||| || | || | | |||||||||||| || || || || | || ||||| Sbjct 422306 TCAAATCATTCATGAGGTATCTGTTCACCACTTGGAATTCACCTGAAATCACTCGGCGAG 422247 Query 22491 GGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCG 22550 || || ||| || || ||||| || ||||||||||| | ||| |||| || | Sbjct 422246 TATAGATATTGCTGGTAAAAGGTTCTGTGGACTCATTGTTTCCAAATATTTGAGATGTGG 422187 Query 22551 AAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTAC 22610 | || || ||||| | || ||| ||| | ||||| | |||||||| || Sbjct 422186 ATGCAGTGGGCATACAAGTAGTCAATAGACTGTTACGTAAGCCATATTTTGAAATATTTT 422127 Query 22611 TCTTGAG--CATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTA 22668 ||| | |||| ||| ||||| | ||| || || || || ||||||||||||| Sbjct 422126 CCTTCAAGCCATC--CCAATCCCATAAATCTGATGGTGTTACTC---CCCACATATCGTA 422072 Query 22669 TTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCAT-ATATCG 22727 ||| | | || ||||||| ||| |||||| || ||||| || ||||||| | | | Sbjct 422071 TTGAAGAATCCCTTGACTCGCTGGGGAGCCTTCATAAGTTTCATAAGGACCATGCTTTTG 422012 Query 22728 CGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGT 22787 ||| |||||| | ||| | || | | ||| || ||||| || ||||| || | Sbjct 422011 GCTCAA-TTCGCATGAAGACTCAAGGGCAGCATGATAGATTGTCTCAAAAATTTTTTTAT 421953 Query 22788 TCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCA 22847 | | ||| ||| | | ||| | || |||||| || || |||| || |||| Sbjct 421952 TAAGTTCATGGGCTTCCTCTGAATCGAAAGGATAACGCATAATTACATACGCATCAGCCA 421893 Query 22848 TACCCTGAACGCCTATACCGATCGGTC 22874 ||| ||||| ||||| || || |||| Sbjct 421892 AACCTTGAACACCTATCCCAATTGGTC 421866 >seq567 Length=338301 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || || || ||||||||||||||| | || ||||| || Sbjct 137465 ATGCAAATCTTTGTTAAAACACTTACTGGCAAAACGATCACCCTTGATGTTGAGCCCAAT 137406 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || |||||| || || || | ||| ||||||||||| | || || || || Sbjct 137405 GATTCTGTCGAGACTGTAAAGTCTAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCAA 137346 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||| ||||| || | || | |||||||||||| Sbjct 137345 CAGAGACTGATTTTTGCCGGGAAACAATTGGAGGATGGTCGCACACTTAGCGATTATAAC 137286 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| ||||| || |||| ||| || |||| || |||| Sbjct 137285 ATCCAGAAAGAATCTACTCTCCACTTGGTTCTTCGATTGAGAGGTGGTA 137237 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || ||||| ||||| |||| ||||| || Sbjct 137921 ATGCAAATTTTCGTCAAAACACTCACTGGTAAAACAATCACTCTCGATGTTGAGCCCAAT 137862 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| ||| || || ||||| | || |||||||||||| | || || || ||| Sbjct 137861 GACTCTGTTGAGACTGTCAAGTCTAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 137802 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || || || | ||||| ||| |||| || |||||| Sbjct 137801 CAGAGACTGATTTTTGCCGGAAAGCAACTTGAAGATGGCCGCACTCTGAGTGACTATAAC 137742 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || |||||||| || || || |||| ||||| |||| || || Sbjct 137741 ATCCAGAAAGAATCTACCCTCCACTTGGTTCTTAGGTTGAGAGGTGG 137695 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || ||||| ||||| |||| ||||| || Sbjct 137237 ATGCAAATTTTCGTCAAAACACTCACTGGTAAAACAATCACTCTCGATGTTGAGCCCAAT 137178 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| ||| || || || || | || |||||||||||| | || || || ||| Sbjct 137177 GACTCTGTTGAGACTGTTAAGTCTAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 137118 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || || || | ||||| ||| |||| || |||||| Sbjct 137117 CAGAGACTGATTTTTGCCGGAAAGCAACTTGAAGATGGCCGCACTCTGAGTGACTATAAC 137058 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || |||||||| || || || |||| ||||| |||| || || Sbjct 137057 ATCCAGAAAGAATCTACCCTCCACTTGGTTCTTAGGTTGAGAGGTGG 137011 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| |||||||| || || |||| || || || | Sbjct 138149 ATGCAGATATTTGTGAAGACGTTGACTGGCAAAACTATAACTCTCGATGTAGAGCCTGAC 138090 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || ||||| || |||||| | || ||||||||||| | ||||| ||||| Sbjct 138089 GATTCGGTCGAGACCGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCGCCAGACCAA 138030 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || || | || || | ||| | | ||| ||||| Sbjct 138029 CAGAGACTCATTTTCGCAGGAAAGCAACTTGAGGATGGTCGCACTCTTAACGACTATAAT 137970 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || |||||||| ||||| || |||| ||| || |||| || || Sbjct 137969 ATCCAGAAAGAATCTACTCTCCACTTGGTTCTTCGATTGAGAGGTGG 137923 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || | || || || || || || | || || || || | Sbjct 137693 ATGCAGATTTTCGTGAAAACCTTAACCGGTAAGACAATTACTCTGGATGTGGAGCCCAAC 137634 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| ||| || ||||| ||| | || ||||||||||| | || || || || Sbjct 137633 GACTCTGTTGAGACGGTAAAATCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCAA 137574 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || |||||| | || || | ||| | |||||||| || Sbjct 137573 CAGAGACTGATTTTCGCAGGAAAACAGCTTGAGGATGGTCGCACTTTAAGCGATTACAAT 137514 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| ||||| || |||| ||||| ||||||| |||| Sbjct 137513 ATCCAGAAGGAATCCACTCTCCACTTGGTTCTTAGGTTGAGGGGTGGTA 137465 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || || ||||||||||| | || || || || | Sbjct 136304 ATGCAAATTTTTGTCAAAACACTCACCGGAAAAACGATCACTCTGGATGTGGAGCCAAAC 136245 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| ||| || || || || | || ||||||||||| | || ||||| || Sbjct 136244 GACTCTGTTGAGACTGTGAAGTCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGATCAA 136185 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || || || ||||| || | || | ||||||||||| Sbjct 136184 CAGAGACTGATTTTTGCAGGGAAGCAATTGGAGGATGGTCGTACGCTTAGCGATTATAAT 136125 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || |||||||| || |||||| | || | ||||| Sbjct 136124 ATCCAGAAAGAATCTACACTTCATTTAGTTTTAAGACT 136087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445734321535440