Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4076 241 2e-58 seq3622 201 1e-46 >seq4076 Length=468004 Score = 241 bits (266), Expect = 2e-58 Identities = 952/1487 (64%), Gaps = 31/1487 (2%) Strand=Plus/Minus Query 62381 GTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 62440 ||| || ||||||||||| || || | |||| ||||| || ||||| |||||| | || Sbjct 422284 GTTCACCACTTGGAATTCACCTGAAATCACTCGGCGAGTATAGATATTGCTGGTAAAAGG 422225 Query 62441 TTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62500 ||| |||||||| ||||| || ||||||| || |||||||| |||||| | Sbjct 422224 TTCTGTGGACTCATTGTTTCCAAATATTTGAGATGTGGATGCAGTGGGCATACAAGTAGT 422165 Query 62501 CAATAAACTATTTC-TAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCC 62559 ||||| ||| || | |||| || ||| || || || || || | ||||||| || Sbjct 422164 CAATAGACTGTTACGTAAG-CCATATTTTGAAATATTTTCCTTCAAGCCATCCCAATCCC 422106 Query 62560 AAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACG 62619 | | ||| || ||| || ||||| ||||| || | ||| || | Sbjct 422105 ATAAATCTGATGGTGTTACTCCCCACATATCGTATTGAAGAATCCCTTGACTCGCTGGGG 422046 Query 62620 ATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCT-AGTTTACAACTCGCCTCTAAT 62678 | ||| |||| || ||||| || || | ||| | ||| | || || | ||| | Sbjct 422045 AGCCTTCATAAGTTTCATAAGGACCATGCTT-TTGGCTCAATTCGCATGAAGACTCAAGG 421987 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 ||| | | ||| || || ||||| || || ||||| || || || |||||| ||| Sbjct 421986 GCAGCATGATAGATTGTCTCAAAAATTTTTTTATTAAGTTCATGGGCTTCCTCTGAATCG 421927 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || |||||| | | | | |||| || || || ||||||||||| || || || ||| Sbjct 421926 AAAGGATAACGCATAATTACATACGCATCAGCCAAACCTTGAACACCTATCCCAATTGGT 421867 Query 62799 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62858 ||||| | ||||||| || ||||||| |||| ||| ||| | ||| || | | Sbjct 421866 CTATGACGACTATTAGATCTTCCAGCTTCAGGAACAGGGTAAAACGAGCGATCAATGACT 421807 Query 62859 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTT-GAGAAAATCA----- 62912 || || | ||| ||| | ||| | || | ||||| |||| | | Sbjct 421806 TTGTTCATATTAACAGTAATGATTTTAGTAATTTCGTGAAGTTTCTTGAAATTGAAGGTG 421747 Query 62913 --AATCGCCCATCTATTA----CAA-ACATGTTCAATGC--AACAGATGCCAGATTACAC 62963 | | | || | ||| ||| | || | | || || || || ||| ||| Sbjct 421746 GGATTTGATAATTTCTTATTGTCAATATATTTAGGAAGCGAAATGGAACACAAATTGCAC 421687 Query 62964 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 63023 || || ||||| | ||| |||| | ||||| ||||| |||||||| | ||| Sbjct 421686 ACAGCAGTTTCATTGGGATCGCTGTATTCGACAATCTCGGTGCATAGATTACTTGATTTG 421627 Query 63024 ATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 63083 || ||| | || | ||| ||||| || ||||| || ||||| || || | ||| ||| Sbjct 421626 ATGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGCAGGCATCTTTGTAGACAATAAAT 421567 Query 63084 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 63143 || ||| ||||| || || | || | || | ||| | | | || |||| | Sbjct 421566 GGTTGACCTGTTTCGATTTGGGCATCCACTATTGAGAACCACAGTTTTTGGGCTTTTACT 421507 Query 63144 ATAGATTTGTATCTCCTTTCTC--TTTCGTATAGAGTATACAATCGTTCGAACTCGTCTC 63201 | | | || | |||||| |||||| | |||| | | ||||| || |||| Sbjct 421506 TTCTGTACGAATTT--TTTCTCAGATTCGTAGCGCATATAGAGCCTCTCGAATTCTTCTC 421449 Query 63202 CCCAAACATTGTCCAAT---CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63258 | | | |||| || | |||||| ||| |||||||||| |||| || |||| Sbjct 421448 CGTA---ACTGTCTGATAGGCCGGGACATGCATGAGGACACATCAGACACCAGTCCCCGT 421392 Query 63259 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318 | |||| |||| |||||| || | ||| || ||||||||||| | ||||| ||| || | Sbjct 421391 CTTCCTCAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAATAAATCCCTGG 421332 Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378 ||| ||||||| ||| |||||||| | || || ||||| | | |||||||| | Sbjct 421331 CCCTAACTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAAGGAATTCGAAAATATCAGCGT 421272 Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438 |||| ||||| | || || || | | ||| |||| ||||| || || ||||| | || Sbjct 421271 GCCAGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACCTTGATCGACGT 421212 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 | | | | ||| || | || || | |||||| | | |||||| || | || | Sbjct 421211 AACGGGATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGAAGTGCCGCACG 421152 Query 63499 TACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTG 63558 | || | ||| | ||| ||| ||||| || | || || ||||| || | Sbjct 421151 TTCCAGCTATAAATGAACCAGAGGCTCGAATGTTGTGCACATGTAACCCGATTCCACCAG 421092 Query 63559 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCAT 63618 | ||||| || |||||| | || ||||| | || || | ||||| |||| Sbjct 421091 CATACTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCCTTGATGCTGTCAT 421032 Query 63619 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATA 63678 | ||||| || | || || |||| || ||| || | | || ||||| || | Sbjct 421031 CTTTCATGGCAATCAAGAAGCAACTAGCCAACTGGCCACAGTTCGAACCAGCATTGAACA 420972 Query 63679 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63738 | || || | |||||| || | | |||||| | || | ||| || | |||| Sbjct 420971 ATGTCGGGGTAGCGTGTGTGTAGTAGGCTTCAGACAAGAGGTCGTAGGTGGACAAAGCTT 420912 Query 63739 AGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63797 || ||||| || | || ||| | |||||||| | ||| | ||| || || ||||| Sbjct 420911 GTTCAATATCATCAAGGTTG-ATTGCAACTGCGACCCTCATGAGCATATGTTGGGGTCTC 420853 Query 63798 TCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 || || | ||| ||| | ||| | ||| |||||| ||||| || Sbjct 420852 TCGACTACTTTCCCGTTCAATTTAATCAAATAGGATCGCTCCAATGT 420806 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 64021 TTGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGAT 64080 |||||||||| ||||||||||| | | |||| ||| || | ||||||||||| |||| Sbjct 420561 TTGTTTCCTTATGTAGATTTGAAACTTCGATTCGGGCAGCCAATATGGCATAATCGGGAT 420502 Query 64081 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 64140 ||| || || | ||||| |||| || ||||| || |||||||| ||||| || | Sbjct 420501 GTTTAGTTGTCATACACGCTGCCGTTTCCGCAGCCAGCGTATCCAATTCGACCGTAGTAA 420442 Query 64141 CTCC 64144 |||| Sbjct 420441 CTCC 420438 >seq3622 Length=296610 Score = 201 bits (222), Expect = 1e-46 Identities = 644/1003 (64%), Gaps = 116/1003 (12%) Strand=Plus/Minus Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 |||| ||||| || || || |||||||||||||| ||||||||||||| ||| || | Sbjct 278639 TTTGATATTCCCCGACGCGCTTTTCGAAAAAATTTGTTTTTCCTTCCATTGAGATCAGAT 278580 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAA------TTCA- 33404 |||||||||| || ||||| | ||||| | || | | || || || | Sbjct 278579 CCATGAAATCGAATGGATTTTCAGCATTGAAGATCTGGTGTAAAAAAAAGAGTACTTTAT 278520 Query 33405 -GAAATCAAT-------------CTATCTGCGACGAATTCTATATATGTTTTCATCATTT 33450 |||| ||| | ||| ||||| || || |||||| || || ||| | Sbjct 278519 CGAAACCAAGGGCCAACATGAGGCGATCAGCGACAAACTCAATATAT--TTGCA-CATCT 278463 Query 33451 CACA---ATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAA 33507 || ||||||||| || | | || || || || |||| | ||| |||| ||| | Sbjct 278462 CAATGGCATTCATTCCGATCAAACTCACAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGA 278403 Query 33508 TGGATACCGCATTTGTTATAATAAATCT---AACG---GTTTCTTCACTCGGTGGATGTA 33561 | || |||| | ||||| ||| ||| | || | | ||| | | Sbjct 278402 TTTCAACTGCATCC---ACAATAATTCTTTGAACCAGAGATTGT------GATGGTTTCA 278352 Query 33562 A---TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAA 33618 |||||| |||||||||| ||||||||||| || || ||||| || || || | Sbjct 278351 CGGTTAAATGACTAAACATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTGA 278292 Query 33619 TTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33678 | | ||| ||| || | | || ||||||| ||||||||||| | |||||| |||| Sbjct 278291 TGAGTTCATTACTGAAGGCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATGG 278232 Query 33679 AAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA------------ 33726 ||| ||||| || |||||||| |||||||| || | ||||||||||| Sbjct 278231 CAGCAAATGAACCAGAAAAGAAAATTCCTTCGACAG-AGCAAAGGCAACTACCCTCACAT 278173 Query 33727 --TAA-GTCTCTCT---------CCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCC 33774 ||| || || | ||| | || | || ||||| || |||||| Sbjct 278172 TGTAAGGTGCCTATATTAGGATAATATATACTCTACTTTGATCGATCCATTTGAGAGCCC 278113 Query 33775 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 33834 ||| ||||| || ||||| || | |||||| | ||| ||||| | | || Sbjct 278112 AATTAGCCTTTTTAGCAACACATGGTAACGTTTCAACAGCACGAAAGAACTTCATACGTT 278053 Query 33835 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 33894 ||| |||||||||| || || |||||||||||||| ||||| |||||||||| ||||| Sbjct 278052 CATCTATATCTTTAACGTATGTGTCGATCAAAAGACTGTACATCTCCGAATGAACGTTTT 277993 Query 33895 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAA 33954 ||| |||| ||| |||||||||||| | | || || | | || | ||| |||| Sbjct 277992 CAACAGCCACCTGGAATCCGTAGAAAAAACGTGCTTCAGGTGTTTGAGCCTCT-CGCAAA 277934 Query 33955 ATCGTT-----CTG--------------------CTAAATTTTCATTCACTATTCCATCA 33989 | |||| ||| ||| |||||| |||||||| |||||| Sbjct 277933 AACGTTTCAGCCTGAATAATAAGGGAAGATCTTACTAGATTTTCGTTCACTATCCCATCA 277874 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGTTT 34048 || || |||||||| || | || | || |||| | || | | | | ||| | Sbjct 277873 CTCGCAGCAAAAAAAGCGAGCACGTAAGAAATGAAATGACGTTCCCCCGGCTTTTAAATA 277814 Query 34049 A----------TT---------CCAATCATTGATATCTTTAGATATATCCACTTCTTCCA 34089 | || |||||||| || || ||||||| |||||| ||||| | Sbjct 277813 AACGAAAAACCTTCAAATTCGCCCAATCATCGAGGTCCTTAGATAAATCCACCTCTTCGA 277754 Query 34090 CTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTG 34149 | |||||||| || ||| | |||||||| || | | ||| || ||||| || | ||| | Sbjct 277753 CAGTCCAAAACGAAGCCACCGCCTTTTTGTAGAATTCCCAAATATCATGGTAGTTGATAG 277694 Query 34150 GGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATAGGTTC 34192 | || ||||| || | ||| ||||| ||| || | |||||| Sbjct 277693 GAAAGATAACGAAACGATTAGGATTGGGTTGGAGAACAGGTTC 277651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629772276750960