Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4076 275 6e-69 seq3622 132 5e-26 >seq4076 Length=468004 Score = 275 bits (304), Expect = 6e-69 Identities = 843/1291 (65%), Gaps = 33/1291 (3%) Strand=Plus/Minus Query 37132 TTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGT 37191 || || || || || || || || | |||| | ||||| |||||||| ||| | ||| Sbjct 422283 TTCACCACTTGGAATTCACCTGAAATCACTCGGCGAGTATAGATATTGCTGGTAAAAGGT 422224 Query 37192 TCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATT 37251 || |||||||||| || | |||||||||||||| |||||||| ||||| | | Sbjct 422223 TCTGTGGACTCATTGTTTCCAAATATTTGAGATGTGGATGCAGTGGGCATACAAGTAGTC 422164 Query 37252 AGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCAT 37311 | || || || | || |||| | | ||| | | || | ||| |||||||||| Sbjct 422163 AATAGACTGTTACGTAAGCCATATTTTGAAATATTTTCCTTCAAGCCATCCCAATCCCAT 422104 Query 37312 AAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAA 37371 ||||||| ||| | | ||||||||| ||||| ||||| |||| ||||||||| || Sbjct 422103 AAATCTGATGGTGTTACTCCCCACATATCGTATTGAAGAATCCCTTGACTCGCTGGGGAG 422044 Query 37372 TCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCT-AGTTCGCAACTAGATTCTAGTGC 37430 | | ||| || |||||||| || | |||| ||| | |||||| ||| || || || Sbjct 422043 CCTTCATAAGTTTCATAAGGACCATGC-TTTTGGCTCAATTCGCATGAAGACTCAAGGGC 421985 Query 37431 GGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAA 37490 |||| ||| ||||| || ||||||| | |||| | | | ||||| || |||||| Sbjct 421984 AGCATGATAGATTGTCTCAAAAATTTTTTTATTAAGTTCATGGGCTTCCTCTGAATCGAA 421925 Query 37491 TGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCT 37550 | ||| | || | || | || ||||||||||||| |||||||| || || || ||||| Sbjct 421924 AGGATAACGCATAATTACATACGCATCAGCCAAACCTTGAACACCTATCCCAATTGGTCT 421865 Query 37551 ATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTT 37610 ||| |||||||||| | ||| || || ||| | | ||| || | ||| Sbjct 421864 ATGACGACTATTAGATCTTCCAGCTTCAGGAACAGGGTAAAACGAGCGATCAATGACTTT 421805 Query 37611 ATTTAGATT---TTTAA-----CTAGTATTTTCGT-AATTATTCTCAACTT----GTCGA 37657 || | ||| ||| ||||| |||||| || | | | || || || | Sbjct 421804 GTTCATATTAACAGTAATGATTTTAGTAATTTCGTGAAGTTTCTTGAAATTGAAGGTGGG 421745 Query 37658 A---CATAAATACGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATA 37714 | |||| | | ||||| | || | ||||| | |||||| || | | ||| || | Sbjct 421744 ATTTGATAATTTC-TTATTGTCAATATATTTAGGAAGCGAAATGGAACACAAATTGCACA 421686 Query 37715 CAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAA 37774 ||||| ||||| | || ||| | |||||| || || |||||||| ||| | | Sbjct 421685 CAGCAGTTTCATTGGGATCGCTGTATTCGACAATCTCGGTGCATAGATTACTTGATTTGA 421626 Query 37775 TTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACG 37834 | ||| | || |||| || ||| || || || | |||||| || | ||| | | Sbjct 421625 TGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGCAGGCATCTTTGTAGACAATAAATG 421566 Query 37835 GCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGA 37894 | ||| ||| ||||| || || | || || ||| | || ||||| || Sbjct 421565 GTTGACCTGTTTCGATTTGGGCATCCACTATTGAGAACCACAGTTTTTGGGCTTTTACTT 421506 Query 37895 TCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCC 37954 || | | |||||||| | |||||| ||||| | | | || || ||| || Sbjct 421505 TCTGTACGAATTTTTTCTCAGATTCGTAGCGCATATAGAGCCTCTCGAATTC-TTCTCCG 421447 Query 37955 ATAC-ATCGCATAATCCTGGACATTCGCAT--GGACACATTAGAGACCATTCTTCATCTT 38011 || || ||| || |||||| |||| |||||||| ||| |||| || | |||| Sbjct 421446 TAACTGTCTGATAGGCCGGGACAT--GCATGAGGACACATCAGACACCAGTCCCCGTCTT 421389 Query 38012 TTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTC 38071 || || | || ||| || ||||| || | ||| | || ||||||||| ||| | Sbjct 421388 CCTCAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAATAAATCCCTGGCCC 421329 Query 38072 TATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCC 38131 || ||| ||| || |||||| || | || || ||||| ||||||||||||| Sbjct 421328 TAACTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAAGGAATTCGAAAATATCAGCGTGCC 421269 Query 38132 ATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATC 38191 | ||||| | |||||| | | | |||||| || || | ||| || |||| | || | Sbjct 421268 AGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACCTTGATCGACGTAAC 421209 Query 38192 TAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATAC 38251 || ||| || ||| || | ||| ||||| | ||| ||||| ||||| | | Sbjct 421208 GGGATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGAAGTGCCGCACGTTC 421149 Query 38252 CGGATATATAAGTACCCTTAGCTCGTATATT----ACTTATCGACAATCCTATTCCACCT 38307 | | |||| | | ||| ||||| || || || | | || || |||||||| Sbjct 421148 CAGCTATAAATGAACCAGAGGCTCGAATGTTGTGCACATGT----AACCCGATTCCACCA 421093 Query 38308 GCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCA 38367 |||| || || || ||||||| | || || || || ||||| | || |||||| Sbjct 421092 GCATACTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCCTTGATGCTGTCA 421033 Query 38368 TCCTTTATTGGTAGTATAAAACAACTAGACA 38398 || || || | | | || ||||||| || Sbjct 421032 TCTTTCATGGCAATCAAGAAGCAACTAGCCA 421002 >seq3622 Length=296610 Score = 132 bits (146), Expect = 5e-26 Identities = 363/548 (66%), Gaps = 41/548 (7%) Strand=Plus/Minus Query 11464 ATCTGCGACGAATTCTATATACTGAGACAT-TAAACAACAATTCATACCTATAAGATCCA 11522 ||| ||||| || || ||||| | |||| | || || ||||| || || | | || Sbjct 278494 ATCAGCGACAAACTCAATATATTTGCACATCTCAATGGCA-TTCATTCCGATCAAACTCA 278436 Query 11523 CCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACG 11582 | || | || | ||||||||||| ||||| || | ||| ||||| | || || Sbjct 278435 CAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGATTTCAACTGCATCCACAATAATTC--- 278379 Query 11583 TTATAACTTCCTTAGATGGTG--GATGTAA----TAAATGTTTAAACATTAAACACGCAA 11636 || ||| | |||| ||| | | | | |||||| ||||||| || || || | Sbjct 278378 TTTGAAC---CAGAGATTGTGATGGTTTCACGGTTAAATGACTAAACATCAAGCATGCGA 278322 Query 11637 AATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA 11696 ||||| ||| | || || || || || || ||||||||| || | || || |||| Sbjct 278321 AATCAGTATGAAGTCCCTCATCCCTGCTGATGAGTTCATTACTGAAGGCCAAGCCAGGCA 278262 Query 11697 TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCT 11756 | || || || ||||||| |||||| || ||||||||||||||||||||||| ||||| | Sbjct 278261 TTAAACCACGCTTTTTTAACCAAAAAATGGCAGCAAATGAACCAGAAAAGAAAATTCCTT 278202 Query 11757 CCACAGCTGCAAATGCTACTACTCT----TTCT------CC------------ATATACC 11794 | |||| ||||| || ||||| || || | || ||||| Sbjct 278201 CGACAG-AGCAAAGGCAACTACCCTCACATTGTAAGGTGCCTATATTAGGATAATATATA 278143 Query 11795 TTGTTGCTAGAT--ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTG 11852 | | | ||| |||||||| ||||||| ||| || || || ||| | | Sbjct 278142 CTCTACTTTGATCGATCCATTTGAGAGCCCAATTAGCCTTTTTAGCAACACATGGTAACG 278083 Query 11853 TTTCTATAGCGTTAAATAAATGCATTTTTTC-TATATTATCTCTTACATATGTATCTATT 11911 |||| | ||| ||| || | ||| ||| | || ||||| | || ||||| || || Sbjct 278082 TTTCAACAGCACGAAAGAACTTCATACGTTCATCTA-TATCTTTAACGTATGTGTCGATC 278024 Query 11912 AATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACAT 11971 || | ||| ||||| || ||||||| ||||| | ||| | || ||||| |||||| | Sbjct 278023 AAAAGACTGTACATCTCCGAATGAACGTTTTCAACAGCCACCTGGAATCCGTAGAAAAAA 277964 Query 11972 CGTGCCTC 11979 ||||| || Sbjct 277963 CGTGCTTC 277956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468491083784080