Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4076 226 4e-54 seq3622 176 6e-39 >seq4076 Length=468004 Score = 226 bits (250), Expect = 4e-54 Identities = 944/1484 (64%), Gaps = 27/1484 (2%) Strand=Plus/Minus Query 65175 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 65234 || || ||||| ||||| || || | |||| ||||| || ||||| |||||| | ||| Sbjct 422283 TTCACCACTTGGAATTCACCTGAAATCACTCGGCGAGTATAGATATTGCTGGTAAAAGGT 422224 Query 65235 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 65294 || |||||||| ||||| || ||||||| || |||||||| |||||| | | Sbjct 422223 TCTGTGGACTCATTGTTTCCAAATATTTGAGATGTGGATGCAGTGGGCATACAAGTAGTC 422164 Query 65295 AATAAACTATTTC-TAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 65353 |||| ||| || | |||| || ||| || || || || || | ||||||| ||| Sbjct 422163 AATAGACTGTTACGTAAG-CCATATTTTGAAATATTTTCCTTCAAGCCATCCCAATCCCA 422105 Query 65354 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGA 65413 | ||| || ||| || ||| ||||| || | ||| || || Sbjct 422104 TAAATCTGATGGTGTTACTCCCCACATATCGTATTGAAGAATCCCTTGACTCGCTGGGGA 422045 Query 65414 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT-AGTTCACAACTCGCCTCTAATG 65472 ||| |||| || || || || || | ||| | ||| | ||| || | ||| | | Sbjct 422044 GCCTTCATAAGTTTCATAAGGACCATGCTTTTG-GCTCAATTCGCATGAAGACTCAAGGG 421986 Query 65473 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 65532 || | | ||| || || || || || || ||||| || || || |||||| ||| | Sbjct 421985 CAGCATGATAGATTGTCTCAAAAATTTTTTTATTAAGTTCATGGGCTTCCTCTGAATCGA 421926 Query 65533 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 65592 | |||||| | | | | |||| || || || ||||||||||| || || || |||| Sbjct 421925 AAGGATAACGCATAATTACATACGCATCAGCCAAACCTTGAACACCTATCCCAATTGGTC 421866 Query 65593 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 65652 |||| | ||||||| || ||||||| |||| ||| ||| | ||| || | || Sbjct 421865 TATGACGACTATTAGATCTTCCAGCTTCAGGAACAGGGTAAAACGAGCGATCAATGACTT 421806 Query 65653 TATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----- 65707 | || | ||| ||| | ||| | || | ||||| |||| || Sbjct 421805 TGTTCATATTAACAGTAATGATTTTAGTAATTTCGTGAAGTTTCTTGAAATTGAAGGTGG 421746 Query 65708 ---TCGCTCATCTATTACA---AACATGTTCA--ATGCAACA--GATGCCAGATTACAAA 65757 | | | || | ||| || || || | | || | | || || ||| || | Sbjct 421745 GATTTGATAATTTCTTATTGTCAATATATTTAGGAAGCGAAATGGAACACAAATTGCACA 421686 Query 65758 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 65817 | || ||||| | ||| |||| | ||||| ||||| |||||||| | |||| Sbjct 421685 CAGCAGTTTCATTGGGATCGCTGTATTCGACAATCTCGGTGCATAGATTACTTGATTTGA 421626 Query 65818 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 65877 || ||| | || | ||| ||||| || ||||| || ||||| || || | ||| |||| Sbjct 421625 TGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGCAGGCATCTTTGTAGACAATAAATG 421566 Query 65878 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 65937 | ||| ||||| || || | || | || | ||| | | | || |||| | Sbjct 421565 GTTGACCTGTTTCGATTTGGGCATCCACTATTGAGAACCACAGTTTTTGGGCTTTTACTT 421506 Query 65938 TAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 65997 | | | || | || || |||||| | |||| | | ||||| || ||||| Sbjct 421505 TCTGTACGAATTTTTTCTCAGATTCGTAGCGCATATAGAGCCTCTCGAATTCTTCTCCGT 421446 Query 65998 AAACATTGTCCAAT---CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 66054 || |||| || || |||||| ||| |||||||||| |||| || ||||| | Sbjct 421445 AAC---TGTCTGATAGGCCGGGACATGCATGAGGACACATCAGACACCAGTCCCCGTCTT 421389 Query 66055 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTC 66114 ||| |||| |||||| || | ||| || ||||||||||| | ||||||||| |||| | Sbjct 421388 CCTCAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAATAAATCCCTGGCCC 421329 Query 66115 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCC 66174 || ||||||| ||| |||||||| | || || ||||| | | ||||||| |||| Sbjct 421328 TAACTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAAGGAATTCGAAAATATCAGCGTGCC 421269 Query 66175 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 66234 | ||||| | || || || | | ||| |||| ||||| || || ||||| | ||| | Sbjct 421268 AGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACCTTGATCGACGTAAC 421209 Query 66235 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 66294 | | ||| || | || || | |||||| | | ||| || || || || || | Sbjct 421208 GGGATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGAAGTGCCGCACGTTC 421149 Query 66295 CGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 66354 | | ||| | ||| || ||||| || | || || ||||| || || Sbjct 421148 CAGCTATAAATGAACCAGAGGCTCGAATGTTGTGCACATGTAACCCGATTCCACCAGCAT 421089 Query 66355 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 66414 ||||| || |||||| | || || || | || |||| || || ||||| Sbjct 421088 ACTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCCTTGATGCTGTCATCTT 421029 Query 66415 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 66474 ||||| || | || || |||| || ||| || | | || ||||| || || | Sbjct 421028 TCATGGCAATCAAGAAGCAACTAGCCAACTGGCCACAGTTCGAACCAGCATTGAACAATG 420969 Query 66475 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 66534 | || | |||||| || | | |||||| | || | ||| || | |||| | Sbjct 420968 TCGGGGTAGCGTGTGTGTAGTAGGCTTCAGACAAGAGGTCGTAGGTGGACAAAGCTTGTT 420909 Query 66535 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593 | ||||| || | || ||| | |||||||| | ||| | ||| || || ||||| || Sbjct 420908 CAATATCATCAAGGTTG-ATTGCAACTGCGACCCTCATGAGCATATGTTGGGGTCTCTCG 420850 Query 66594 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 || | || ||| | ||| | ||| |||||| ||||| || Sbjct 420849 ACTACTTTCCCGTTCAATTTAATCAAATAGGATCGCTCCAATGT 420806 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 66814 TTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGAT 66873 ||||||| || ||||||||||| || | |||| || || | ||||||||||| |||| Sbjct 420561 TTGTTTCCTTATGTAGATTTGAAACTTCGATTCGGGCAGCCAATATGGCATAATCGGGAT 420502 Query 66874 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 66933 ||| || || | ||||| |||| || ||||| || |||||||| ||||| || | Sbjct 420501 GTTTAGTTGTCATACACGCTGCCGTTTCCGCAGCCAGCGTATCCAATTCGACCGTAGTAA 420442 Query 66934 CTCC 66937 |||| Sbjct 420441 CTCC 420438 >seq3622 Length=296610 Score = 176 bits (194), Expect = 6e-39 Identities = 626/986 (63%), Gaps = 118/986 (12%) Strand=Plus/Minus Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 |||| ||||| || || || |||||||||||||| ||||| ||||| | ||| || | Sbjct 278639 TTTGATATTCCCCGACGCGCTTTTCGAAAAAATTTGTTTTTCCTTCCATTGAGATCAGAT 278580 Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAA------TTCA- 35980 ||||||||||||||||||| | |||| | || | | || || || | Sbjct 278579 CCATGAAATCGAATGGATTTTCAGCATTGAAGATCTGGTGTAAAAAAAAGAGTACTTTAT 278520 Query 35981 -GAAATCAAT-------------CTATCTGCGACAAATTCTATATATGTTTTCATCATTT 36026 |||| ||| | ||| |||||||| || |||||| || || ||| | Sbjct 278519 CGAAACCAAGGGCCAACATGAGGCGATCAGCGACAAACTCAATATAT--TTGCA-CATCT 278463 Query 36027 CACA---ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAA 36083 || ||||||||| || | | || || || || |||| | ||| |||| ||| | Sbjct 278462 CAATGGCATTCATTCCGATCAAACTCACAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGA 278403 Query 36084 TAGAGACCGCGTCTGTTATAAT----------AGATATTACTGTTTCTTCACTCGGTGGA 36133 | || || || ||||| ||| ||| | ||||| ||| Sbjct 278402 TTTCAACTGCATCCACAATAATTCTTTGAACCAGAGATTGTGATGGTTTCAC--GGT--- 278348 Query 36134 TACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTA 36193 |||||| |||||||||| ||||||||||| || || ||||| || || || Sbjct 278347 -----TAAATGACTAAACATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTG 278293 Query 36194 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 36253 || | ||| || || | | || ||||||| ||||||||||| | |||||| ||| Sbjct 278292 ATGAGTTCATTACTGAAGGCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATG 278233 Query 36254 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA----------- 36302 | |||||||| |||||||||||||||||||| || | |||||||||| Sbjct 278232 GCAGCAAATGAACCAGAAAAGAAAATTCCTTCGACAG-AGCAAAGGCAACTACCCTCACA 278174 Query 36303 ---TAA-GTCTCTCT---------CCATAACCGGCACTGTCATGTATCCACTTTTGAGCC 36349 ||| || || | ||| | ||| | || ||||| || ||||| Sbjct 278173 TTGTAAGGTGCCTATATTAGGATAATATATACTCTACTTTGATCGATCCATTTGAGAGCC 278114 Query 36350 CAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttt 36409 |||| ||||| || ||||| || | || || | |||| ||||| | | | Sbjct 278113 CAATTAGCCTTTTTAGCAACACATGGTAACGTTTCAACAGCACGAAAGAACTTCATACGT 278054 Query 36410 tCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 36469 |||| |||||||||| ||||| || ||||||||||| ||||| |||||||||| |||| Sbjct 278053 TCATCTATATCTTTAACGTATGTGTCGATCAAAAGACTGTACATCTCCGAATGAACGTTT 277994 Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 36529 |||| |||| || |||||||||||| | | || || | | || | ||| ||| Sbjct 277993 TCAACAGCCACCTGGAATCCGTAGAAAAAACGTGCTTCAGGTGTTTGAGCCTCT-CGCAA 277935 Query 36530 AATCGTT-----CTG--------------------CTAAATTTTCATTCACTATTCCGTC 36564 || |||| ||| ||| |||||| |||||||| || || Sbjct 277934 AAACGTTTCAGCCTGAATAATAAGGGAAGATCTTACTAGATTTTCGTTCACTATCCCATC 277875 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTTTGGTGTTAGTT 36623 ||| || |||||||| || | || | || |||| | || | | | ||| | Sbjct 277874 ACTCGCAGCAAAAAAAGCGAGCACGTAAGAAATGAAATGACGTTCCCCCGGCTTTTAAAT 277815 Query 36624 TA----------TT---------CCAATCATTGATATCTTTAGATATATCCACTTCTTCC 36664 | || |||||||| || || ||||||| |||||| ||||| Sbjct 277814 AAACGAAAAACCTTCAAATTCGCCCAATCATCGAGGTCCTTAGATAAATCCACCTCTTCG 277755 Query 36665 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATT 36724 || |||||||| || ||| | |||||||| || | | ||| || ||||| || | || Sbjct 277754 ACAGTCCAAAACGAAGCCACCGCCTTTTTGTAGAATTCCCAAATATCATGGTAGTTGATA 277695 Query 36725 GGAAAAATAACAAATCTATTTTGATT 36750 ||||| ||||| || | ||| |||| Sbjct 277694 GGAAAGATAACGAAACGATTAGGATT 277669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658125436239880