Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4076 224 1e-53 seq3622 201 2e-46 >seq4076 Length=468004 Score = 224 bits (248), Expect = 1e-53 Identities = 925/1444 (64%), Gaps = 31/1444 (2%) Strand=Plus/Minus Query 79054 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGT 79113 || || ||||| ||||| || || | |||| ||||| || ||||| |||||| | ||| Sbjct 422283 TTCACCACTTGGAATTCACCTGAAATCACTCGGCGAGTATAGATATTGCTGGTAAAAGGT 422224 Query 79114 TCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACC 79173 || || ||||| ||||| || ||||||| || ||||| || |||||| | | Sbjct 422223 TCTGTGGACTCATTGTTTCCAAATATTTGAGATGTGGATGCAGTGGGCATACAAGTAGTC 422164 Query 79174 AATAAACTATTTC-TAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCA 79232 |||| ||| || | |||| || ||| | || || || || | ||||||||||| Sbjct 422163 AATAGACTGTTACGTAAG-CCATATTTTGAAATATTTTCCTTCAAGCCATCCCAATCCCA 422105 Query 79233 AAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGA 79292 | ||| || || || ||| | ||| ||||| ||||| || | ||| || || Sbjct 422104 TAAATCTGATGGTGTTACTCCCCACATATCGTATTGAAGAATCCCTTGACTCGCTGGGGA 422045 Query 79293 TCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCT-AATTCACAACTCGCCTCTAATG 79351 ||| || ||||||||||| || | ||||| |||| ||||| || | ||| | | Sbjct 422044 GCCTTCATAAGTTTCATAAGGACCATGCTTTT-GGCTCAATTCGCATGAAGACTCAAGGG 421986 Query 79352 CTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAA 79411 | | | ||| || || || ||||| || ||||| || || || ||||| ||| | Sbjct 421985 CAGCATGATAGATTGTCTCAAAAATTTTTTTATTAAGTTCATGGGCTTCCTCTGAATCGA 421926 Query 79412 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 79471 | |||||| | | | | |||| || || || ||||||||||| || || || |||| Sbjct 421925 AAGGATAACGCATAATTACATACGCATCAGCCAAACCTTGAACACCTATCCCAATTGGTC 421866 Query 79472 TATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATA------ATTAATATCTA 79525 |||| | ||||||| || ||||||| |||| ||| ||| | || ||| || Sbjct 421865 TATGACGACTATTAGATCTTCCAGCTTCAGGAACAGGGTAAAACGAGCGATCAATGACTT 421806 Query 79526 TAATTTTATTGAGATTCCTGA--CTATTACTTT-GACCACATCCTTTAGTTTGA-----G 79577 | | |||| | | | ||| || || ||| | | | ||| | |||| | Sbjct 421805 TGTTCATATTAACAGTAATGATTTTAGTAATTTCGTGAAGTTTCTTGAAATTGAAGGTGG 421746 Query 79578 AAAATCAAATCGTCCATCTATTACAAACATGTTCA--ACGCGACA--GATGCCAGATTAC 79633 | | | | || |||| || || || | | |||| | || || ||| | Sbjct 421745 GATTTGATAATTTC---TTATTGTCAATATATTTAGGAAGCGAAATGGAACACAAATTGC 421689 Query 79634 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACT 79693 | || || ||||| | ||| |||| | || || ||||| || ||||| | | Sbjct 421688 ACACAGCAGTTTCATTGGGATCGCTGTATTCGACAATCTCGGTGCATAGATTACTTGATT 421629 Query 79694 TAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 79753 | ||| ||| | || | ||| ||||| || ||||| || ||||| || || | ||| | Sbjct 421628 TGATGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGCAGGCATCTTTGTAGACAATAA 421569 Query 79754 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 79813 | || ||| ||||| || || | || | || | ||| | | | || |||| Sbjct 421568 ATGGTTGACCTGTTTCGATTTGGGCATCCACTATTGAGAACCACAGTTTTTGGGCTTTTA 421509 Query 79814 --TTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTC 79871 || | || | || | || || |||||| | |||| | | ||||| || || Sbjct 421508 CTTTCTGTAC--GAATTTTTTCTCAGATTCGTAGCGCATATAGAGCCTCTCGAATTCTTC 421451 Query 79872 TCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATC 79931 ||| || || || || |||||| | | ||||||||||| |||| || || || Sbjct 421450 TCCGTAACTGTCTGATAGGCCGGGACATGCATGAGGACACATCAGACACCAGTCCCCGTC 421391 Query 79932 ATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 79991 |||| |||| |||||| || | ||| || ||||||||||| | ||||| ||| |||| Sbjct 421390 TTCCTCAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAATAAATCCCTGGC 421331 Query 79992 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 80051 ||| |||||| ||| |||||||| | || || ||||| | | |||||||| || Sbjct 421330 CCTAACTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAAGGAATTCGAAAATATCAGCGTG 421271 Query 80052 CCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTA 80111 ||| ||||| | || || || | | ||| || | ||||| || || ||||| | ||| Sbjct 421270 CCAGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACCTTGATCGACGTA 421211 Query 80112 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT 80171 | | | ||| || | || || | |||||| | | ||| || || || || || Sbjct 421210 ACGGGATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGAAGTGCCGCACGT 421151 Query 80172 CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 80231 || | ||| | ||| ||| ||||| || | || || ||||| || || Sbjct 421150 TCCAGCTATAAATGAACCAGAGGCTCGAATGTTGTGCACATGTAACCCGATTCCACCAGC 421091 Query 80232 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATC 80291 ||||| || |||||| | || || || | || |||| ||||| ||||| Sbjct 421090 ATACTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCCTTGATGCTGTCATC 421031 Query 80292 AATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 80351 ||||| || | || || |||| || ||| || | | || ||||| || || Sbjct 421030 TTTCATGGCAATCAAGAAGCAACTAGCCAACTGGCCACAGTTCGAACCAGCATTGAACAA 420971 Query 80352 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGA 80411 || || | |||||| || | | |||||||| || | ||| || | |||| Sbjct 420970 TGTCGGGGTAGCGTGTGTGTAGTAGGCTTCAGACAAGAGGTCGTAGGTGGACAAAGCTTG 420911 Query 80412 TTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTT 80470 ||| ||||| || | || ||| | || ||||| | ||| | ||| || || ||||| | Sbjct 420910 TTCAATATCATCAAGGTTG-ATTGCAACTGCGACCCTCATGAGCATATGTTGGGGTCTCT 420852 Query 80471 CAAC 80474 | || Sbjct 420851 CGAC 420848 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 80693 TTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGAT 80752 |||||||||| ||||||||||| || | |||| ||| || || ||||||||||| |||| Sbjct 420561 TTGTTTCCTTATGTAGATTTGAAACTTCGATTCGGGCAGCCAATATGGCATAATCGGGAT 420502 Query 80753 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 80812 ||| || || | ||||| |||| || ||||| || |||||||| ||||| || | Sbjct 420501 GTTTAGTTGTCATACACGCTGCCGTTTCCGCAGCCAGCGTATCCAATTCGACCGTAGTAA 420442 Query 80813 CTCC 80816 |||| Sbjct 420441 CTCC 420438 >seq3622 Length=296610 Score = 201 bits (222), Expect = 2e-46 Identities = 633/986 (64%), Gaps = 110/986 (11%) Strand=Plus/Minus Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 |||| ||||| || || || |||||||||||||| ||||||||||||| ||| || | Sbjct 278639 TTTGATATTCCCCGACGCGCTTTTCGAAAAAATTTGTTTTTCCTTCCATTGAGATCAGAT 278580 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA------TTCA- 49782 |||||||||| || ||||| | |||| | || | | || || || | Sbjct 278579 CCATGAAATCGAATGGATTTTCAGCATTGAAGATCTGGTGTAAAAAAAAGAGTACTTTAT 278520 Query 49783 -GAAATCAAT-------------CTATCCGCGACAAATTCTATATATGTTTTCATCATTT 49828 |||| ||| | ||| |||||||| || |||||| || || ||| | Sbjct 278519 CGAAACCAAGGGCCAACATGAGGCGATCAGCGACAAACTCAATATAT--TTGCA-CATCT 278463 Query 49829 CACA---ATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAA 49885 || ||||||||| || | | || || || || |||| | ||| |||| ||| | Sbjct 278462 CAATGGCATTCATTCCGATCAAACTCACAGGTAGTGCTTCAGTCAAAAACTCTTTTTCGA 278403 Query 49886 TGGATACCGCATCTGTTATAATAGATCTAACG---GTTTCTTCACTCGGTGGATGCAA-- 49940 | || ||||| ||||| | ||| | || | | ||| | || Sbjct 278402 TTTCAACTGCATCCACAATAATTCTTTGAACCAGAGATTGT------GATGGTTTCACGG 278349 Query 49941 -TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTA 49999 |||||| |||||||||| ||||||||||| || || ||||| || || || || | Sbjct 278348 TTAAATGACTAAACATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTGATGA 278289 Query 50000 GTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 50059 |||| || || | | || ||||||| ||||||||||| | |||||| |||| | Sbjct 278288 GTTCATTACTGAAGGCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATGGCAG 278229 Query 50060 CAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC----- 50114 ||||||| ||||||||||| |||||||| || | ||||||||||| | ||| | Sbjct 278228 CAAATGAACCAGAAAAGAAAATTCCTTCGACAG-AGCAAAGGCAACTACCCTCACATTGT 278170 Query 50115 ----TCCATA-ACTGG--------------CGCTGTCATGTATCCACTTTTGAGCCCAAT 50155 | | || | | | || | || ||||| || ||||||||| Sbjct 278169 AAGGTGCCTATATTAGGATAATATATACTCTACTTTGATCGATCCATTTGAGAGCCCAAT 278110 Query 50156 CGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCAT 50215 ||||| || ||||| || | |||||| | ||| ||||| | | ||||| Sbjct 278109 TAGCCTTTTTAGCAACACATGGTAACGTTTCAACAGCACGAAAGAACTTCATACGTTCAT 278050 Query 50216 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 50275 |||||||||| || || |||||||||||||| ||||| |||||||||| |||||||| Sbjct 278049 CTATATCTTTAACGTATGTGTCGATCAAAAGACTGTACATCTCCGAATGAACGTTTTCAA 277990 Query 50276 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATC 50335 |||| ||| |||||||||||| | | || || | | || | ||| ||||| | Sbjct 277989 CAGCCACCTGGAATCCGTAGAAAAAACGTGCTTCAGGTGTTTGAGCCTCT-CGCAAAAAC 277931 Query 50336 G-TTCAG------------------------CTAAATTTTCATTCACTATTCCGTCACTG 50370 | ||||| ||| |||||| |||||||| || ||||| Sbjct 277930 GTTTCAGCCTGAATAATAAGGGAAGATCTTACTAGATTTTCGTTCACTATCCCATCACTC 277871 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATG-TTTTTCGTTGGGTGTTAGTTTA-- 50427 || |||||||| || | || | || ||||| || | || | ||| | | Sbjct 277870 GCAGCAAAAAAAGCGAGCACGTAAGAAATGAAATGACGTTCCCCCGGCTTTTAAATAAAC 277811 Query 50428 --------TT---------CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 50470 || |||||||| || || ||||||| ||| || ||||| || | Sbjct 277810 GAAAAACCTTCAAATTCGCCCAATCATCGAGGTCCTTAGATAAATCCACCTCTTCGACAG 277751 Query 50471 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGA 50530 ||||||| || ||| | |||||||| || | | ||| || ||||| || | ||| || | Sbjct 277750 TCCAAAACGAAGCCACCGCCTTTTTGTAGAATTCCCAAATATCATGGTAGTTGATAGGAA 277691 Query 50531 AAATAACAAATCTATTTGGATTTGGT 50556 | ||||| || | ||| ||||| ||| Sbjct 277690 AGATAACGAAACGATTAGGATTGGGT 277665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718217111581480