Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4076 206 4e-48 seq3622 190 3e-43 >seq4076 Length=468004 Score = 206 bits (228), Expect = 4e-48 Identities = 946/1492 (63%), Gaps = 43/1492 (3%) Strand=Plus/Minus Query 71137 TTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGT 71196 || || ||||| ||||| || || | |||| ||||| || ||||| |||||| | ||| Sbjct 422283 TTCACCACTTGGAATTCACCTGAAATCACTCGGCGAGTATAGATATTGCTGGTAAAAGGT 422224 Query 71197 TCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 71256 || |||||||| ||||| || ||||||| || |||||||| |||||| | | Sbjct 422223 TCTGTGGACTCATTGTTTCCAAATATTTGAGATGTGGATGCAGTGGGCATACAAGTAGTC 422164 Query 71257 AATAGACTATTTC-TAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCA 71315 |||||||| || | |||| |||| | | || || || || | ||||||| ||| Sbjct 422163 AATAGACTGTTACGTAAG-CCATATTTTGAAATATTTTCCTTCAAGCCATCCCAATCCCA 422105 Query 71316 AAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA 71375 | ||| |||||| || || || | ||| || || Sbjct 422104 TAAATCTGATGGTGTTACTCCCCACATATCGTATTGAAGAATCCCTTGACTCGCTGGGGA 422045 Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCT-AGTTCACAACTCGCCTCTAATG 71434 ||| |||| || || || || || | |||| |||| | ||| || | ||| | | Sbjct 422044 GCCTTCATAAGTTTCATAAGGACCATGCTTTT-GGCTCAATTCGCATGAAGACTCAAGGG 421986 Query 71435 CTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAA 71494 | ||| ||| || || || ||||| || ||||| || || || |||||| ||| | Sbjct 421985 CAGCATGATAGATTGTCTCAAAAATTTTTTTATTAAGTTCATGGGCTTCCTCTGAATCGA 421926 Query 71495 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTC 71554 | |||||| | | | | |||| || || || |||||||| || || || || |||| Sbjct 421925 AAGGATAACGCATAATTACATACGCATCAGCCAAACCTTGAACACCTATCCCAATTGGTC 421866 Query 71555 TGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATA------ATTAATATCTA 71608 | || | ||||||| || ||||||| |||| ||| ||| | || ||| || Sbjct 421865 TATGACGACTATTAGATCTTCCAGCTTCAGGAACAGGGTAAAACGAGCGATCAATGACTT 421806 Query 71609 TAATTTTATTGAGATTTCTGACTAT--TACTTT-GACCACATCCTTTAGTTTGA-----G 71660 | | |||| | | | ||| | | || ||| | | | ||| | |||| | Sbjct 421805 TGTTCATATTAACAGTAATGATTTTAGTAATTTCGTGAAGTTTCTTGAAATTGAAGGTGG 421746 Query 71661 AAAATCA-AATCTCCCATCTATTACAAACACGTTCAAG----GCAACAGATGCCAGATTA 71715 | | | ||| || |||| || | || | | | || || || ||| Sbjct 421745 GATTTGATAATTTCT----TATTGTCAATATATTTAGGAAGCGAAATGGAACACAAATTG 421690 Query 71716 CAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACAC 71775 || || || ||||| | |||| |||| | ||| || ||||| |||||||| | Sbjct 421689 CACACAGCAGTTTCATTGGGATCGCTGTATTCGACAATCTCGGTGCATAGATTACTTGAT 421630 Query 71776 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATA 71835 |||||| ||| | || | ||| ||||| || ||||| || ||||| || || | |||| Sbjct 421629 TTGATGACTCCAAGGTTCTTTTGGTTACTTTTCTTGTTGCAGGCATCTTTGTAGACAATA 421570 Query 71836 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 71895 || || ||| ||||| || || | || | || | ||| | | | || ||| Sbjct 421569 AATGGTTGACCTGTTTCGATTTGGGCATCCACTATTGAGAACCACAGTTTTTGGGCTTTT 421510 Query 71896 ATTATATTCTTGTATCTCTTTTCTCT----TTCGTATTGTGTATATAATCGTTCGAACTC 71951 | | |||| ||| |||| ||| |||||| | |||| | | ||||| || Sbjct 421509 ACT---TTCT-GTACGAATTTTTTCTCAGATTCGTAGCGCATATAGAGCCTCTCGAATTC 421454 Query 71952 GTCTCCCCAAGCATTGTCTAAT---CCAGGACATTCATTCGGACACATCAATGACCACTC 72008 ||||| || ||||| || || |||||| ||| |||||||||| |||| || Sbjct 421453 TTCTCCGTAAC---TGTCTGATAGGCCGGGACATGCATGAGGACACATCAGACACCAGTC 421397 Query 72009 TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 72068 || || || | |||| |||||| || | ||| || ||||||||||| | ||||| ||| Sbjct 421396 CCCGTCTTCCTCAACTCTTTTCATGAACAAATCCGGCATCCAAAGAGCGAGAAATAAATC 421337 Query 72069 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 72128 |||| ||| |||||| ||| |||||||| | || || ||||| | | |||||| Sbjct 421336 CCTGGCCCTAACTTCCTCGGCTCCCGTATTCTTCCTGAGTTCAAGGAATTCGAAAATATC 421277 Query 72129 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATC 72188 || ||||| ||||| | || || || | | ||| |||| ||||| || || ||||| Sbjct 421276 AGCGTGCCAGGGTTCAAGATAAATAGCAAAAGATCCTGGCCTCTTGTTACCACCTTGATC 421217 Query 72189 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACC 72248 | ||| | | | ||| || | || || | |||||| | | ||| || || | || Sbjct 421216 GACGTAACGGGATGCGTTGTTGAATACCCTAAGCATTGGTACGAGACCGTTAGAAGTGCC 421157 Query 72249 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCC 72308 || || | ||| | ||| ||| ||||| ||| | || || ||||| Sbjct 421156 GCACGTTCCAGCTATAAATGAACCAGAGGCTCGAATGTTGTGCACATGTAACCCGATTCC 421097 Query 72309 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACT 72368 || || ||||| || |||||| | || || || | || |||| || || Sbjct 421096 ACCAGCATACTTAGAAATGGCCGCGCATTCGCTCAATGTGTCGAAAATACCCTTGATGCT 421037 Query 72369 ATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 72428 ||||| ||||| || | || || |||| || ||| || | | || ||||| Sbjct 421036 GTCATCTTTCATGGCAATCAAGAAGCAACTAGCCAACTGGCCACAGTTCGAACCAGCATT 420977 Query 72429 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 || || || || | |||||| || | | |||||||| || | ||| || | Sbjct 420976 GAACAATGTCGGGGTAGCGTGTGTGTAGTAGGCTTCAGACAAGAGGTCGTAGGTGGACAA 420917 Query 72489 AGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAG 72547 |||| ||| ||||| || | || ||| | || ||||| | ||| | |||||| || | Sbjct 420916 AGCTTGTTCAATATCATCAAGGTTG-ATTGCAACTGCGACCCTCATGAGCATATGTTGGG 420858 Query 72548 GTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 |||| || || | || || | ||| | ||| |||||| ||||| || Sbjct 420857 GTCTCTCGACTACTTTCCCGTTCAATTTAATCAAATAGGATCGCTCCAATGT 420806 Score = 93.3 bits (102), Expect = 6e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 72776 TTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGAT 72835 |||||||||| ||||||||||| || | |||| ||| || | ||||||||||| |||| Sbjct 420561 TTGTTTCCTTATGTAGATTTGAAACTTCGATTCGGGCAGCCAATATGGCATAATCGGGAT 420502 Query 72836 GTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 72895 ||| || || | ||||| |||| || ||||| || |||||||| ||||| || | Sbjct 420501 GTTTAGTTGTCATACACGCTGCCGTTTCCGCAGCCAGCGTATCCAATTCGACCGTAGTAA 420442 Query 72896 CTCC 72899 |||| Sbjct 420441 CTCC 420438 >seq3622 Length=296610 Score = 190 bits (210), Expect = 3e-43 Identities = 447/685 (65%), Gaps = 71/685 (10%) Strand=Plus/Minus Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 |||||| |||||||||| ||||||||||| || || |||||||| || || || | Sbjct 278347 TAAATGACTAAACATCAAGCATGCGAAATCAGTATGAAGTCCCTCATCCCTGCTGATGAG 278288 Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 ||| || || | | || ||||||| ||||||||||| | |||||| || | || Sbjct 278287 TTCATTACTGAAGGCCAAGCCAGGCATTAAACCACGCTTTTTTAACCAAAAAATGGCAGC 278228 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 |||||| ||||||||||| |||||||| || | |||||||||| | ||| | || Sbjct 278227 AAATGAACCAGAAAAGAAAATTCCTTCGACAGA-GCAAAGGCAACTACCCTCACATTGTA 278169 Query 42226 ACCGGC------------------------ACTGTCATGTATCCACTTTTGAGCCCAATC 42261 | || ||| | || ||||| || ||||||||| Sbjct 278168 AGGTGCCTATATTAGGATAATATATACTCTACTTTGATCGATCCATTTGAGAGCCCAATT 278109 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATT 42321 ||||| || ||||| || | |||||| | ||| ||||| | | ||||| Sbjct 278108 AGCCTTTTTAGCAACACATGGTAACGTTTCAACAGCACGAAAGAACTTCATACGTTCATC 278049 Query 42322 ACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAAT 42381 |||||||||| ||||| |||||||||||||| ||||| || ||||||| |||||||| Sbjct 278048 TATATCTTTAACGTATGTGTCGATCAAAAGACTGTACATCTCCGAATGAACGTTTTCAAC 277989 Query 42382 GGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCG 42441 |||| ||| |||||||||||| | | || || | || | ||| ||||| || Sbjct 277988 AGCCACCTGGAATCCGTAGAAAAAACGTGCTTCAGGTGTTTGAGCCTCT-CGCAAAAACG 277930 Query 42442 -TTCAG------------------------CTAAATTTTCGTTCACTATTCCGTCACTGG 42476 ||||| ||| ||||||||||||||| || ||||| | Sbjct 277929 TTTCAGCCTGAATAATAAGGGAAGATCTTACTAGATTTTCGTTCACTATCCCATCACTCG 277870 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGG-TGTTAATTTA--- 42532 | |||||||| || | || | || |||| ||| |||| | |||| | | Sbjct 277869 CAGCAAAAAAAGCGAGCACGTAAGAAATGAAATGACGTTCCCCCGGCTTTTAAATAAACG 277810 Query 42533 -------TT---------CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGT 42576 || |||||||| || || ||||||| ||| || ||||| || || Sbjct 277809 AAAAACCTTCAAATTCGCCCAATCATCGAGGTCCTTAGATAAATCCACCTCTTCGACAGT 277750 Query 42577 CCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 |||||| || || | |||||||| || | | ||| |||||||| || | || || || Sbjct 277749 CCAAAACGAAGCCACCGCCTTTTTGTAGAATTCCCAAATATCATGGTAGTTGATAGGAAA 277690 Query 42637 AATAACAAATCTATTTGGATTTGGT 42661 ||||| || | ||| ||||| ||| Sbjct 277689 GATAACGAAACGATTAGGATTGGGT 277665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671090903145320