Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq567 104 2e-17 >seq567 Length=338301 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || || | ||| || || | ||||||||||| || ||||| |||||||| Sbjct 137239 CCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATGTTATAATCGCTA 137298 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| || || | |||||| || ||| | ||||| | || ||||| ||||| Sbjct 137299 AGTGTGCGACCATCCTCCAATTGTTTCCCGGCAAAAATCAGTCTCTGTTGATCAGGAGGA 137358 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||| |||| | || || || | || |||| || || Sbjct 137359 ATTCCTTCCTTGTCTTGGATTTTAGACTTTA-CAGTCTCGACAGAATCATTGGGCTCAAC 137417 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||| ||||| || | |||||| || || ||||||||| Sbjct 137418 ATCAAGGGTGATCGTTTTGCCAGTAAGTGTTTTAACAAAGATTTGCATA 137466 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 ||||||||||||| |||||||||||| || || || |||||||| | || | || Sbjct 136093 AAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATCGCTAAGCGTACGACCATCC 136152 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | ||| || || ||| | ||||| | || ||||||||||| || ||||| ||||| Sbjct 136153 TCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGAATTCCTTCCTTGTC- 136211 Query 143093 GTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 | | || | || | || || || | ||| | || || || || | ||| | ||| Sbjct 136212 TTGGATCTTAGACTTCACAGTCTCAACAGAGTCGTTTGGCTCCACATCCAGAGTGATCGT 136271 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| | |||||| || || ||||||||| Sbjct 136272 TTTTCCGGTGAGTGTTTTGACAAAAATTTGCATA 136305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || || | ||||||||||| || ||||| || || |||| |||| ||||| Sbjct 137028 AACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCATCTTC 137087 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||| || || ||| | ||||| | |||||||| || || || ||||| ||||| | Sbjct 137088 AAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTGTC-CT 137146 Query 143095 AATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 | || | ||| | || || || | ||| |||| || || || | ||| | || | Sbjct 137147 GGATCTTAGACTTAACAGTCTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATTGTTT 137206 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || || | |||||| ||||| ||||||||| Sbjct 137207 TACCAGTGAGTGTTTTGACGAAAATTTGCATA 137238 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || || | || ||||| || || || ||||||||||| | |||| || || Sbjct 137484 AACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGCTTAAAGTGCGACCATCCTC 137543 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 || ||||| || || | ||||| | || ||||| || || || ||||| ||||| Sbjct 137544 AAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGAATTCCTTCCTTGTCTTG 137603 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || ||||| | || || | ||| |||| || || || | ||| | ||||| Sbjct 137604 AATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACATCCAGAGTAATTGTCTT 137663 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || ||||| ||||| || ||||| Sbjct 137664 ACCGGTTAAGGTTTTCACGAAAATCTGCAT 137693 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || || | ||||||||||| || ||||| || || |||| |||| ||||| Sbjct 137712 AACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTCAGAGTGCGGCCATCTTC 137771 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||| || || ||| | ||||| | |||||||| || || || ||||| ||||| | Sbjct 137772 AAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGAATTCCTTCCTTGTC-CT 137830 Query 143095 AATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 | || | || | || || || | ||| |||| || || || | ||| | || | Sbjct 137831 GGATCTTAGACTTGACAGTCTCAACAGAGTCATTGGGCTCAACATCGAGAGTGATTGTTT 137890 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || | |||||| ||||| |||||||| Sbjct 137891 TACCAGTGAGTGTTTTGACGAAAATTTGCAT 137921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506977913976240