Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq567 109 4e-19 >seq567 Length=338301 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | ||| || || || || || ||||| || ||||| |||||||| Sbjct 137239 CCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATGTTATAATCGCTA 137298 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || |||||||| || || | |||| | ||||| || ||| Sbjct 137299 AGTGTGCGACCATCCTCCAATTGTTTCCCGGCAAAAATCAGTCTCTGTTGATCAGGAGGA 137358 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||| ||||||| | || | | ||| | || ||| Sbjct 137359 ATTCCTTCCTTGTCTTGGATTTTAGACTTTACAGTCTCGACAGAATCATTGGGCTCAACA 137418 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || ||||| || || || ||||| ||||| ||||||||| Sbjct 137419 TCAAGGGTGATCGTTTTGCCAGTAAGTGTTTTAACAAAGATTTGCATA 137466 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | |||||||||||||||||| || || ||||| || || || |||||||| Sbjct 136078 CCACCACGAAGTCTTAAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATCGCTA 136137 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || ||||| || || || | |||| | ||||| ||| ||| Sbjct 136138 AGCGTACGACCATCCTCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGA 136197 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || || ||| ||| | || | | ||| | || ||| Sbjct 136198 ATTCCTTCCTTGTCTTGGATCTTAGACTTCACAGTCTCAACAGAGTCGTTTGGCTCCACA 136257 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || ||||| || || || ||||| ||||||||||||||| Sbjct 136258 TCCAGAGTGATCGTTTTTCCGGTGAGTGTTTTGACAAAAATTTGCATA 136305 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || | ||| || || ||||| || ||||| || ||||| || || || Sbjct 137011 CCACCTCTCAACCTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTC 137070 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | ||| || || || | |||| | || || || ||| Sbjct 137071 AGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGA 137130 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || || ||| ||| | || | | || | || ||| Sbjct 137131 ATTCCTTCCTTGTCCTGGATCTTAGACTTAACAGTCTCAACAGAGTCATTGGGCTCAACA 137190 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || |||||||| || || ||||| || |||||||||||| Sbjct 137191 TCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGACGAAAATTTGCATA 137238 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||| || | ||| || || || ||||| || || || || |||||||||||| Sbjct 137467 CCACCCCTCAACCTAAGAACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGCTT 137526 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | || || | ||||| || ||| | |||| | ||||| || ||| Sbjct 137527 AAAGTGCGACCATCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGGA 137586 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||| || ||||| | || | | ||| | || ||| Sbjct 137587 ATTCCTTCCTTGTCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCACA 137646 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| || ||||| || | ||||| || ||||| ||||| Sbjct 137647 TCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCAT 137693 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || | ||| || || ||||| || ||||| || ||||| || || || Sbjct 137695 CCACCTCTCAACCTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTTATAGTCACTC 137754 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | ||| || || || | |||| | || || || ||| Sbjct 137755 AGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTGATCCGGGGGA 137814 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || || ||| ||| | || | | || | || ||| Sbjct 137815 ATTCCTTCCTTGTCCTGGATCTTAGACTTGACAGTCTCAACAGAGTCATTGGGCTCAACA 137874 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || |||||||| || || ||||| || ||||||||||| Sbjct 137875 TCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGACGAAAATTTGCAT 137921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362153788262337