Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq567 82.4 5e-11 >seq567 Length=338301 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| |||| | ||||| || | || || ||||| || || || Sbjct 137001 AATCTGCATTCCACCTCTCAACCTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTT 137060 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 || ||| || | || | || || | ||||||||| ||| || | | ||||| Sbjct 137061 ATAGTCACTCAGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTG 137120 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 |||| ||| || ||||| || || ||| || || || | || | ||| || Sbjct 137121 ATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTAGACTTAACAGTCTCAACAGAGTCATT 137180 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| | ||| || ||||| || ||||| || || || ||||| |||||||||||||| Sbjct 137181 GGGCTCAACATCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGACGAAAATTTGCAT 137237 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| |||| | ||||| || | || || ||||| || || || Sbjct 137685 AATCTGCATTCCACCTCTCAACCTAAGAACCAAGTGGAGGGTAGATTCTTTCTGGATGTT 137744 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 || ||| || | || | || || | ||||||||| ||| || | | ||||| Sbjct 137745 ATAGTCACTCAGAGTGCGGCCATCTTCAAGTTGCTTTCCGGCAAAAATCAGTCTCTGCTG 137804 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 |||| ||| || ||||| || || ||| || || || | || | ||| || Sbjct 137805 ATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTAGACTTGACAGTCTCAACAGAGTCATT 137864 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| | ||| || ||||| || ||||| || || || ||||| |||||||||||||| Sbjct 137865 GGGCTCAACATCGAGAGTGATTGTTTTACCAGTGAGTGTTTTGACGAAAATTTGCAT 137921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318755233467786