Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq567 107 1e-18 >seq567 Length=338301 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||||| | ||||| || || || ||||| || |||||||| ||||| Sbjct 137923 CCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATATTATAGTCGTTA 137982 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || || |||| || | ||| |||||||| || || | | || ||||| | || Sbjct 137983 AGAGTG-CGACCATCCTCAAGTTGCTTTCCTGCGAAAATGAGTCTCTGTTGGTCTGGCGG 138041 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| ||| || |||||| | | || | ||| | ||||| || Sbjct 138042 AATACCTTCCTTGTCTTGAATCTTAGATTTGACGGTCTCGACCGAATCGTCAGGCTCTAC 138101 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTC 44124 ||||| || || ||||| || || || |||||||||||||| ||||| || Sbjct 138102 ATCGAGAGTTATAGTTTTGCCAGTCAACGTCTTCACAAATATCTGCATATC 138152 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || ||||| || | ||||| || || ||| || || || ||||| |||||| | Sbjct 137466 ACCACCCCTCAACCTAAGAACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGCT 137525 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| || |||| || | ||||||||||| || |||| | || || || | || Sbjct 137526 TAAAGTGCGACCATCCTCAAGCTGTTTTCCTGCGAAAATCAGTCTCTGTTGATCTGGGGG 137585 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||| || ||| ||| | |||||| || |||||||| Sbjct 137586 AATTCCTTCCTTGTCTTGAATCTTAGATTTTACCGTCTCAACAGAGTCGTTGGGCTCCAC 137645 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | |||||||| ||||||||||| || ||||| || || ||||| Sbjct 137646 ATCCAGAGTAATTGTCTTACCGGTTAAGGTTTTCACGAAAATCTGCAT 137693 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 |||||| || ||||| || || ||||| || |||||||||||| | | ||| | Sbjct 136089 TCTTAAAACTAAATGAAGTGTAGATTCTTTCTGGATATTATAATCGCTAAGCGTACGACC 136148 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| |||||||| || |||||||| |||| | || || || |||| | ||||| || Sbjct 136149 ATCCTCCAATTGCTTCCCTGCAAAAATCAGTCTCTGTTGATCGGGAGGAATTCCTTCCTT 136208 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 ||| || || || || | |||||| || ||||||||||| | || || Sbjct 136209 GTCTTGGATCTTAGACTTCACAGTCTCAACAGAGTCGTTTGGCTCCACATCCAGAGTGAT 136268 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| ||||| | || || ||||| |||||||| Sbjct 136269 CGTTTTTCCGGTGAGTGTTTTGACAAAAATTTGCAT 136304 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||||| | ||||| || || || ||||| || || ||||||||| | Sbjct 137238 ACCACCTCTCAATCGAAGAACCAAGTGGAGAGTAGATTCTTTCTGGATGTTATAATCGCT 137297 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || |||| ||||||||||| || ||||| |||| | || || || |||| Sbjct 137298 AAGTGTGCGACCATCCTCCAATTGTTTCCCGGCAAAAATCAGTCTCTGTTGATCAGGAGG 137357 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||||| || || | | |||| ||| ||||| || Sbjct 137358 AATTCCTTCCTTGTCTTGGATTTTAGACTTTACAGTCTCGACAGAATCATTGGGCTCAAC 137417 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | || || ||||| || || | || || ||||| |||||||| Sbjct 137418 ATCAAGGGTGATCGTTTTGCCAGTAAGTGTTTTAACAAAGATTTGCAT 137465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354752707584036