Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq1155 1766 0.0 >seq1155 Length=6594 Score = 1766 bits (1958), Expect = 0.0 Identities = 1341/1560 (86%), Gaps = 39/1560 (3%) Strand=Plus/Minus Query 24600 CAGCATGTTAGATTTTCGTGTTTCGTCACATGCGCACTTTGACGAGGCCTGCAGAAAATT 24659 || |||||| ||||||| ||||| |||| | |||| |||||| || ||| | || Sbjct 2540 CAACATGTTTGATTTTCAGGTTTCCAAACATCCCCACTATGACGAAGCATGCCGGGCTTT 2481 Query 24660 --CGCAGCTACTCATAACGTGAAAGAACTAGCGAATAAAGCCGGAATCAAGCCGCATACG 24717 |||||| ||| ||| || | || || | || || || || || ||| Sbjct 2480 TGCGCAGCG--TCACAACATGGCGAAGCTGGCAGAGCGTGCGGGCATGAACGTTCAAACG 2423 Query 24718 CTTTAC--AACAAACTCAACCCAGAACAGCCGCACCAGTTAACGCCGCGTGAAGTCTGGA 24775 |||| ||||| |||||||| |||||||| |||||||| ||||||| |||| | ||| Sbjct 2422 --TTACGTAACAAGCTCAACCCGGAACAGCCTCACCAGTTCACGCCGCCTGAATTGTGGC 2365 Query 24776 CACTGACAGATCTGACCGAAGACTCGACCCTCGTCGATGGTTTTCTGGCGCAGATCCATT 24835 |||||| || |||||||||||||| |||||||| |||||||||||||||||||| |||| Sbjct 2364 TACTGACTGACCTGACCGAAGACTCAACCCTCGTTGATGGTTTTCTGGCGCAGATTCATT 2305 Query 24836 GTCTGCCATGCGTACCGGTCAACGAGCTGGCAAAAGAGAAACTGCAATCCTACGTTATGC 24895 | |||||||| |||||||| || |||||||| ||||| ||| |||| || || || |||| Sbjct 2304 GCCTGCCATGTGTACCGGTTAATGAGCTGGCTAAAGACAAATTGCAGTCTTATGTCATGC 2245 Query 24896 ACGCAATGAGTGAACTTGGCGAACTGGCAAGCGGTGCAGTTTCCGGCGACCGCCTCACGC 24955 ||||||| ||||||| ||||| ||||| |||||||| || || | || ||||| || Sbjct 2244 GCGCAATGCGTGAACTCGGCGAGCTGGCGAGCGGTGCGGTATCTGATGAACGCCTGACCT 2185 Query 24956 CAGCCAAAAAACAAAACATGATTGCTAGCGTAAATGCGGGGATTCGCATGTTGTCATTAT 25015 | ||| || || |||||||||| ||||| ||||| || ||||| |||||||| || | Sbjct 2184 CTGCCCGTAAGCACAACATGATTGAAAGCGTTAATGCTGGCATTCGTATGTTGTCGTTGT 2125 Query 25016 CGGCAATGGCGCTGCATGCGCGTCTGCAGACTAATCCTGCCATGTCGAGCGTAGTCGATA 25075 |||| ||||| ||||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct 2124 CGGCGCTGGCGTTGCATGCGCGTCTGCAGACTAATCCCGCTATGTCGAGCGTGGTCGATA 2065 Query 25076 CCATGAGCGGTATTGGCGCATCCTTCGGGCTGATTTGAGGTGCGTATGCTGAAAAGTGAA 25135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2064 CCATGAGCGGTATTGGCGCATCCTTCGGGCTGATTTGAGGTGCGTATGCTGAAAAGTGAA 2005 Query 25136 CCGTCATTCGCGTCTCTGCTCGTTAAACAAAGCCCAGGCATGCATTACGGCCACGGCTGG 25195 ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 2004 CCGTCATTCGCGTCTCTGCTCGTTAAACATAGCCCCGGCATGCACTACGGCCACGGCTGG 1945 Query 25196 ATTGCAGGTAAGGACGGCAAGCGCTGGCACCCTAGCCGCTCACAGGCTGATTTACTGGCT 25255 || ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| || Sbjct 1944 ATCGCAGGTAAGGACGGCAATCGCTGGCACCCGAGCCGCTCACAGGCTGATTTGCTGACT 1885 Query 25256 GGCCTCTCTACTCAAAAGCAGGGGGAATCATGGCTATCGAAGCTGTTTCCGCGACTGTTC 25315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1884 GGCCTCTCTACTCAAAAGCAGGGGGAATCATGGCTATCGAAGCTGTTTCCGCGACTGTTC 1825 Query 25316 CGCTAAAAGCGGGTGAACGTCTGGCCGGTCTTAATCATGTGGCTGGAATTGCGCGCGAGA 25375 ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| Sbjct 1824 CGCTAAAAGCGGGTGAACGTCTGGCCGGTCTCAATCACGTGGCT-GAATTGCGCGCGAGA 1766 Query 25376 TATTGGGGCGATAGCTGGAAAGAGGTTGAGCGTTTTTGTCGATGATATGCGCCGATAAAC 25435 |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1765 TATTGGGGTGATAGCTGGAAAGAGGTTGAGCG-CTTTGTCGATGATATGCG-CGATAAAC 1708 Query 25436 GTGACCCACAATTTGAAAGAAAATAATCGGGCGCTGGCCCGCTATTTTTCTTTCTGGCAA 25495 ||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 1707 GTGACCCACAATTTG-AAGAAAATAATCGGGCGCTGG-CCGCTA-TTTTCTTTCTGGCAA 1651 Query 25496 AAATACCCGGCGGCTCGTCATGAAGCTCGAATTAAGTGAGCTGACTACTGACGAGAAAAA 25555 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1650 AAATA-CCGGCGGCTCGTCATG-AGCTCGAATTAAGTGAGCTGACTACTGACGAGAAAAA 1593 Query 25556 AGCGCTTATTACAGCGATGAATCATTTTCGTGCTGTAGTGAGCTTATTTCCAAAACGGCT 25615 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1592 AGCGCTTATTACAGCGATGAATCATTTTCGTGCAGTGGTGAGCTTATTTCCAAAACGGCT 1533 Query 25616 AACCATGCCGAATTAGCCAACGGCAGAAA-TTAATGGCGTAAACCCGCCGGGTATTCTT- 25673 ||||||||||||||| ||| |||||| ||||||||||||||||||| || ||||| Sbjct 1532 AACCATGCCGAATTAATCAA-AACAGAAATTTAATGGCGTAAACCCGCC-GGACTTCTTA 1475 Query 25674 TTGCCTAAATTCAGGAG---GATTTATGAGT-----CGAGTTGTTTATTTTTCAACGCCG 25725 ||||| || ||||||| | ||||| || ||| | | ||| ||| | | Sbjct 1474 TTGCCCGAAATCAGGAGAGTTAATTATGCGTAATACCGAAACCCGT-TCTTTTAACACTG 1416 Query 25726 AGAAATGCAGGAAAAAACACGCTGGATGAATTGTTTAAAGAAGCCAAAAAAGAAGAGCGT 25785 | | || | |||||| | |||| | | || || ||||||||||||||| Sbjct 1415 A-TAGTG---------ATGCGCTGGCCGTATTGCTGACCGATGCAAAAAAAGAAGAGCGT 1366 Query 25786 AAAGACCGCGCGCTCGCTGTTTCCATCCGCCTTGAGGCGCTGGCTATCCATATCACCAAA 25845 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1365 AAAGACCGTGCGCTCGCTGTTTCCATCCGCCTTGAGGCGCTGGCTATCCATATCACCAAA 1306 Query 25846 GAGGGTATGAGCGGCACCGAAGCTGCCGAACTGCTGCGTCGTGAAGCAACCCGCTTTGAG 25905 |||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| Sbjct 1305 GAGGGTATGAGCGGCACCGAAGCTGCCGAACTGCTGCGCTGCGAAGCCACCCGCTTTGAG 1246 Query 25906 AATGAATCACAGGAGCTGCACTAATGGCCGACGCAATGGATTTAGCACAACAGCGCGAGC 25965 || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1245 AACGAATCACAGGAGCTGCACTAATGGCCGACGCAATGGATTTAGCACAACAGCGTGAGC 1186 Query 25966 AGGAAGACCGCGAGCGCCACATCAGCAACGCGCGCAGCCGTATCGCTGCGCCTTCCCGTT 26025 |||||||||||||||| || ||||||| || ||||||||||||||||| |||||||||| Sbjct 1185 AGGAAGACCGCGAGCGTCATATCAGCATTGCACGCAGCCGTATCGCTGCACCTTCCCGTT 1126 Query 26026 TTCTTTGCGAAGAATGTGACGCACCAATCCCGGAAGCTCGCCGCGCTGCGATTCCGGGCG 26085 |||||||||| ||||||||| | ||||||||||| |||||||| |||||||||||| | Sbjct 1125 TTCTTTGCGAGGAATGTGACACCCCAATCCCGGAGGCTCGCCGTATTGCGATTCCGGGTG 1066 Query 26086 TGGCTTTTTGCGTGACCTGCCAACAAATCGCCGAACTTAAATTAAAACACTATCGGGGTG 26145 |||| |||||| |||||||||| ||||||| ||||| |||| |||||| || | |||| Sbjct 1065 TGGCCTTTTGCATGACCTGCCAGCAAATCGAAGAACTCAAATCAAAACATTACAGAGGTG 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97906906197932