Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq2922 248 5e-61 seq1304 102 5e-17 >seq2922 Length=17083 Score = 248 bits (274), Expect = 5e-61 Identities = 550/818 (67%), Gaps = 8/818 (1%) Strand=Plus/Minus Query 61782 GTTTCAGCTTTGGATTGCGAGAATGGACGATTACAAAACTTTCCCG-GCCTTTCTTCTCA 61840 |||| || |||||||| || ||| | || || ||| ||||||| || |||| || Sbjct 985 GTTTAAGTTTTGGATTACGCTTATGAATAATAACGAAATTTTCCCGCGCTTTTCGAACCA 926 Query 61841 ATAGAACAGTCGAGATAGCCGATTGTTTTAAGCTGTTCTATCGCTTTCTTAATGATACGG 61900 | || | || || || || || ||| | ||| || | |||||| || || | ||| Sbjct 925 GT-GAGAATTCCAGGTAACCTATCTTTTGTAACTGCTCAAGCGCTTTTTTGATTGTGCGG 867 Query 61901 TTTTGCTCGCCAACAGCTGACTGC--AAAGCCAGGCGCTCACGGATTCGCGCGAACGATA 61958 ||||| |||| |||| ||||| | || || || ||||| | || | || || Sbjct 866 TTTTGTTCGCTTACAGA--ACTGCTGAGAGAAAGACGTTCACGTAAACGTGAAAAGCTTA 809 Query 61959 GCGGCAACGGGTTCTGCGGAAGGCTTTCGATGAAAGTGTAAATGGCTTGTGCAGCTTCTT 62018 ||| | || || ||||||||||| |||||||||||||| || || || ||||| | Sbjct 808 CCGGAATAGGATTGGCTGGAAGGCTTTCAATGAAAGTGTAAATAGCCTGAGCCGCTTCCT 749 Query 62019 TCTTCGGAAGGGCACGCAAGGCGTGGTGTTGCAACAGAACGCGATAATCAAGCTGGAACA 62078 |||| || || || | || || || || | || || | || || ||||| |||| Sbjct 748 TCTTGGGTAGTGCTTTGATTGCATGTTGCTGAAGAAGGACTCTGTAGTCCAGCTGAAACA 689 Query 62079 GCTCCCACAACTTCGAATCAGCCTCCAGCTCTATCAGATCAAGGTCAGCATCAAAACGCC 62138 | ||||| | || ||| || || |||| | | ||| ||||||||||| | Sbjct 688 GTTCCCAGAGTTTTTCATCCGCTTCAAGCTGGACGATATCTTTTTCAGCATCAAAGTAGC 629 Query 62139 CGACCTTCAGCAGACCAGTCTGATAGCCGCCTTTAGCATCTTTTCCGCGCTTAAAAGCGA 62198 | |||| || || |||||||| | || |||||||| ||| || || |||| || Sbjct 628 CTGTTTTCAAAAGCCCTGTCTGATAACTTCCCTTAGCATCACGTCCACGTTTGAAAGAGA 569 Query 62199 TACCCTTGTTACGCAAGCGTCCAAGTGATTCATGAATGGTTAAACGCAGTTTCGCATCCA 62258 | || ||||| || || | || ||||| || | | ||||| | | || | Sbjct 568 TTGATTTATTACGTAATTTCCCCAAAGACTCATGGATCGAAAGGCGCAGCCTGCCGTCTA 509 Query 62259 GACGTTTTGAGGGGAAACCACAGGCTTTAGCGAATTCCTGAAACGATAACTGGATGGTGT 62318 |||||| | | || ||||| ||||||| || || || | | || | | Sbjct 508 TACGTTTAGCAGAAAAGCCACACCCTTTAGCAAACTCAGTGAATTTCAGTTCAATTTTAT 449 Query 62319 TTGAGGACAAGCCGTATTTGCTGAACGCGTAGATGACACCGATCCACGTTTTGAAATCAG 62378 | || | || |||| | |||||| || ||||| || || |||||| |||||| ||| Sbjct 448 TCGATGTCAGTCCGTGTCGGCTGAAAGCATAGATAACTCCTATCCACACTTTGAAGTCAC 389 Query 62379 TATCCATATCGAGTCGAGGACCGGTGATTTTAATATCATCGTAACCCTCGGCTTTAGCTA 62438 |||||||||||||||| ||||| | || || |||| ||||||||| || || || | Sbjct 388 TATCCATATCGAGTCGCGGACCTGAAATATTGATATGATCGTAACCTTCAGCCCGGGCAA 329 Query 62439 TCTCCAGCTGGGAAAACGCTTTGGTGGCATCAATCTCTTTACTTTC-TCCTTTGCTCTTT 62497 |||||||||| |||||| || | ||||||| || |||| ||| || | || Sbjct 328 TCTCCAGCTGTGAAAACAATTCCGAAGCATCAACAATATTGTTTTCGCCCTGTGAT-TTC 270 Query 62498 GATGGCTTCGGCACGAATACCCCCAAGCGCATCAACGCTACAGGCTGCACAGTGTTGTTT 62557 | || || || || || || || | ||||||||| || || ||||| ||||| ||||| Sbjct 269 GTGGGTTTAGGAACAAAAACACCAAGGCGCATCAATGCCACGGGCTGAACAGTATTGTTA 210 Query 62558 GAATTAACTGTTAGTTCTTTTGCCTTACTTTCAATGTC 62595 ||||||||||| || | |||| | ||||| | ||||| Sbjct 209 GAATTAACTGTGAGCTGTTTTTCTTTACTGACCATGTC 172 >seq1304 Length=23161 Score = 102 bits (112), Expect = 5e-17 Identities = 244/365 (67%), Gaps = 7/365 (2%) Strand=Plus/Minus Query 72258 ATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAACGCTG 72317 || |||||||| || ||||| ||| | || || | || || ||||| |||| | Sbjct 1879 ATCATGATCGATTATCTGCAGCTTGTACGTTGTCCTGGCATG---GAGAACCGTACGCAG 1823 Query 72318 GAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTG 72377 ||||| ||||||||||| || || || ||||| |||| || ||| | ||||| Sbjct 1822 GAAATCGCCGAGATTTCACGTTCTCTTAAGGCATTGGGCAAAGAACTCGGCTGCCCGGTA 1763 Query 72378 GTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAAT 72437 | || | || || |||||||| | | ||||| || || || ||||| || ||| Sbjct 1762 CTTGCGCTCTCTCAGCTTAATCGTCAGGTAGAACAACGCGCTGATAAACGCCCTAATAAT 1703 Query 72438 TCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTAT 72497 ||| | ||||| || || || |||||||||| || |||||||||| ||| | || Sbjct 1702 GGCGATCTTCGTGATTCCGGCGCGCTTGAGCAGGATGCTGACCTGATTAGCTTTATCTAC 1643 Query 72498 CGCGACGAAGTTTATCACCCGGATAGCGAAATG--AAGGGCATTGCCGAGGTAATTATCG 72555 | || || |||||| || | || | | || || |||||| || ||| | || ||| Sbjct 1642 AGGGATGAGGTTTATAACGCCGACA-CTAACTGTCCAGGGCA-GGCAGAGATCATCATCA 1585 Query 72556 GAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCAC 72615 | || || || | || |||| || || ||| | || ||| | || ||||| | | Sbjct 1584 GTAAACAGCGCCAGGGGCCAACCGGAACCCTGAAAGTGCAGTTTGATGGAAAATACACGC 1525 Query 72616 GGTTT 72620 |||| Sbjct 1524 TGTTT 1520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303213923975997