Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelohanellus_20kitauei_20[genbank_20GCA_5F000827895.1_202015-01-23] 5,757 sequences; 150,348,159 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq2570 437 3e-118 >seq2570 Length=4711 Score = 437 bits (484), Expect = 3e-118 Identities = 782/1138 (69%), Gaps = 8/1138 (1%) Strand=Plus/Minus Query 27456 GCTTCATTAT-TACTCCTCCCAACGTGGCTTAATCAAATCATCAAAAATTTCCTGGCAAA 27514 |||||||||| || || ||||| ||||| ||||||| | ||||||||| || | ||||| Sbjct 1634 GCTTCATTATCTAATC-TCCCAGCGTGGTTTAATCAGACGATCAAAAATCTCATTGCAAA 1576 Query 27515 CAGGCTCCCAAATAGAAACTGCATTTCGCCAGGCGTTAAGTGTTGAGCGCTGATAAGCAG 27574 |||| ||||| ||||| | || || ||||||||| || || || |||| | || Sbjct 1575 CAGGTTCCCAGATAGAGAGGGCGTTACGCCAGGCGCCGGTTGAAGAACGTTGATCAATAG 1516 Query 27575 CCTGCTCAAATACCGTACGCATTTTTATTTGGCCCTTTCCTACTTCATCTGTCACCCTGA 27634 |||| ||||| || || | ||| || || || || || |||||||| || | | | Sbjct 1515 CCTGTTCAAAAACGGTTCTCATACGGATCTGACCTTTACCGACTTCATCGGTTTCACGTA 1456 Query 27635 CAACTTGACGCAGAACCATCGACCCCCACGTATTTCTTATCTGCTCTTCCATCCAGCGCG 27694 |||| | ||||||||| ||||| | || | || || ||||||||||| | | Sbjct 1455 CAACATTTTTCAGAACCATACTTCCCCAGGCATCCCGAATTTGTTCTTCCATCCACGGGG 1396 Query 27695 ACTGATTACCAGTAGTCAGGCTGTATTTGGTTAGCAGCAGTCGTACCACCGGCTCGAAAC 27754 |||| || || | |||||||| || ||||| | || || | |||||||| | Sbjct 1395 ACTGCGAGCCGTTATTATTACTGTATTTAGTAAGCAGAATACGGACATCTGGCTCGAAGC 1336 Query 27755 CGCCTAAATCAACGGTTTTTAGTAGGTCCAGAAGCATGGTGAAGAACTGCAGAACGGATG 27814 | | ||| ||| | || || ||||| ||||||| ||| |||||||| |||| | Sbjct 1335 CTTTAAGATCCACGTTCTTAAGCAGGTCGCGAAGCATATCGAAAAACTGCAGTGCGGAGG 1276 Query 27815 AATAATCAAATAGCTCTGCAGGGGTAGCTACGACAATAATATCGGCAGCACAAACAACAT 27874 || || || |||||||| || |||| || | | | ||| |||||||| ||||||| Sbjct 1275 TGTAGTCGAACAGCTCTGCCGGAGTAGGGACAATCAGTACATCAGCAGCACATACAACAT 1216 Query 27875 TAATCGTCCCTGTTCCGAGGTTAGGAGCGCTATCAATAACGATAATGTCATAGTTATCCC 27934 | ||||| || | || ||||| || ||||| || ||||| || | |||||| | || Sbjct 1215 TTATCGTACCGATACCAAGGTTGGGTGCGCTGTCGATAACTATCACGTCATAATCATGAG 1156 Query 27935 ATACGGATTCTATAGCAGCCCGTAGCATCAGGTGAGGCGGATGAGGTAGTTTTCCTTGGG 27994 || | ||| || || || ||||||||||| || | ||||| ||| |||| Sbjct 1155 CGACAGTTTCAATGGCCAGACGGAGCATCAGGTGCGGGTCAGCAGGTAATTTGCCTT--- 1099 Query 27995 CGTGGTATTGC---ATCAGGTCCGTTTCGATACGGTGAAGCGCCAAGCAGCTGGGGATAA 28051 ||| ||| | ||||| || ||||| || ||||| || |||| ||| ||||| | Sbjct 1098 CGTCAAATTTCCCCATCAGCTCGGTTTCAATGCGGTGCAGTGCCAGACAGGACGGGATGA 1039 Query 28052 TGTCCAGACCTGGCCAGCAGGTCGGCTTTATAGCGTATTCCGCATTATCACGCTCACCAA 28111 | || || || ||||||||||| |||||||||||||| || | ||| || |||| Sbjct 1038 TATCAAGGCCAGGCCAGCAGGTGGGCTTTATAGCGTAGCTGGCGTCATCCTTTTCCCCAA 979 Query 28112 GGTAAAACGGGAGCAAAGTATCATCGGCGTGAATGTGCAAATCAGGCACATAGCCATGAT 28171 | ||||| || || | ||| || || || ||||| || | ||| ||||| | || |||| Sbjct 978 GATAAAAGGGCAGGAGAGTGTCCTCAGCATGAATATGAAGATCGGGCACCCATCCGTGAT 919 Query 28172 ACATAGAGGCGGTTCCCTGCGGATCATTACCTTCAATGAGTAGAACTCGGTGACCCTGTA 28231 ||||||| || |||||||| || ||||| ||||||| || ||||| ||| | || | | Sbjct 918 ACATAGAAGCAGTTCCCTGTGGGTCATTGCCTTCAACAAGCAGAACACGGAGTCCTTTCA 859 Query 28232 AGGCTAACCATTGAGCTTCATGTACTGCAGATGAGGTTTTATAAACGCCACCTTTGTGTG 28291 || | ||||| || || | ||||||||| ||||| ||||||||||| | Sbjct 858 GAGCAAGATCCTGAGCCAGGTGAACGGATACTGAGGTTTTGTAAACACCACCTTTGTGAG 799 Query 28292 ACATAACAGCTAAAACGGCTGGATTTTTATCGGCTGGCCGTTGATTAGGATTACCGAAAA 28351 |||| | | || | ||| ||| | | || | | |||| || | Sbjct 798 CAGCAACACCAATCACCGGCGGAAACGCATCTTCAGCACGGCGCAGTCGTGTACCAAATA 739 Query 28352 TGTTCCGCATATGGCTAATTTGGTCGATGGTATAGCCAGCACGACGTTCGACGCGGCCAC 28411 | |||||| || | ||||| ||||||||||| ||| | || | || || | |||| Sbjct 738 CATCCCGCATGTGATTGATTTGCTCGATGGTATAACCAACGCGTTGCTCAACTCTTCCAC 679 Query 28412 GCAATTCAAAATCAGGTGGCGGTAACCGCCCATTCTTCTCAGCATCTCTAATCGCTTGCG 28471 | ||| | |||||| | || | ||| ||| ||||| ||||| || || || || | Sbjct 678 GGGTTTCCATATCAGGGTGAGGCAGCCGGCCAGCTTTCTCGGCATCCCTGATAGCCTGAG 619 Query 28472 GTGAAACACCGATTAAATCAGCAACCTCGGTTATCCCCCAGCGACGAGTAATCTTACGTG 28531 ||| || || | ||||||||| | || |||| |||||| || || || || || | Sbjct 618 ATGACACGCCAACTAAATCAGCTGCTTCACCAATCCTCCAGCGCCGGGTTATTTTCCGGG 559 Query 28532 CTTCAGGGCTATCATCACCAAATTGCGCTATGGCAATGGCTTGCGTCATCTCTTGTCC 28589 |||| || || |||||| ||| ||||| ||||| || |||| |||||| || || || Sbjct 558 CTTCCGGACTGTCATCATTAAACTGCGCAATGGCGATTGCTTTCGTCATTTCATGACC 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164990319768742